Compson, Z. G., K. C. Larson, M. S. Zinkgraf, and T. G. Whitham. 2011. A genetic basis for the manipulation of sink-source relationships by the galling aphid Pemphigus batae.. Oecologia 167:711 - 21.

Grady, K. C., S. M. Ferrier, T. E. Kolb, S. C. Hart, G. A. Allan, and T. G. Whitham. 2011. Genetic variation in productivity of foundation riparian species at the edge of their distribution: implications for restoration and assisted migration in a warming climate .. Global Change Biology 17:3724 - 3735.

Lamit, L. J., M. A. Bowker, L. M. Holeski, R. R. Næsborg, S. C. Wooley, M. Zinkgraf, R. L. Lindroth, T. G. Whitham, and C. A. Gehring. 2011. Genetically-based trait variation within a foundation tree species influences a dominant bark lichen .. Fungal Ecology 4:103 - 109.

Smith, D. S., J. K. Bailey, S. M. Shuster, and T. G. Whitham. 2011. A geographic mosaic of trophic interactions and selection: trees, aphids and birds. Journal of Evolutionary Biology 24:422 - 429.

Axelsson, E. P., J. Hjältén, T. G. Whitham, R. Julkunen-Tiitto, and G. Pilate. 2011. Leaf ontogeny interacts with Bt modification to affect innate resistance in GM aspens. Chemoecology 21:161 - 169.

Michalet, R., S. Xiao, B. Touzard, D. S. Smith, L. A. Cavieres, R. M. Callaway, and T. G. Whitham. 2011. Phenotypic variation in nurse traits and community feedbacks define an alpine community.. Ecology letters 14:433 - 43.

Bridgeland, W. T., P. Beier, T. Kolb, and T. G. Whitham. 2010. A conditional trophic cascade: birds benefit faster growing trees with strong links between predators and plants.. Ecology 91:73 - 84.

Keith, A. R., J. K. Bailey, and T. G. Whitham. 2010. A genetic basis to community repeatability and stability.. Ecology 91:3398 - 406.

Bailey, J. K., J. A. Schweitzer, F. Ubeda, J. Koricheva, C. J. LeRoy, M. D. Madritch, B. J. Rehill, R. K. Bangert, D. G. Fischer, G. J. Allan, and T. G. Whitham. 2009. From genes to ecosystems: a synthesis of the effects of plant genetic factors across levels of organization.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 364:1607 - 16.

Marks, J. C., G. A. Haden, B. A. Harrop, E. G. Reese, J. L. Keams, M. E. Watwood, and T. G. Whitham. 2009. Genetic and environmental controls of microbial communities on leaf litter in streams .. Freshwater Biology 54:2616 - 2627.

Lojewski, N. R., D. G. Fischer, J. K. Bailey, J. A. Schweitzer, T. G. Whitham, and S. C. Hart. 2009. Genetic basis of aboveground productivity in two native Populus species and their hybrids.. Tree physiology 29:1133 - 42.

Sthultz, C. M., T. G. Whitham, K. Kennedy, R. Deckert, and C. A. Gehring. 2009. Genetically based susceptibility to herbivory influences the ectomycorrhizal fungal communities of a foundation tree species.. The New phytologist 184:657 - 67.

Barbour, R. C., J. M. O'Reilly-Wapstra, D. W. De Little, G. J. Jordan, D. A. Steane, J. R. Humphreys, J. K. Bailey, T. G. Whitham, and B. M. Potts. 2009. A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences.. Ecology 90:1762 - 72.

Holeski, L. M., M. J. C. Kearsley, and T. G. Whitham. 2009. Separating ontogenetic and environmental determination of resistance to herbivory in cottonwood.. Ecology 90:2969 - 73.

Woolbright, S. A., S. P. Difazio, T. Yin, G. D. Martinsen, X. Zhang, G. J. Allan, T. G. Whitham, and P. Keim. 2008. A dense linkage map of hybrid cottonwood (Populus fremontii x P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree.. Heredity 100:59 - 70.

Whitham, T. G., S. P. DiFazio, J. A. Schweitzer, S. M. Shuster, G. J. Allan, J. K. Bailey, and S. A. Woolbright. 2008. Extending genomics to natural communities and ecosystems.. Science 320:492 - 5.

Schweitzer, J. A., M. D. Madritch, J. K. Bailey, C. J. LeRoy, D. G. Fischer, B. J. Rehill, R. L. Lindroth, A. E. Hagerman, S. C. Wooley, S. C. Hart, and T. G. Whitham. 2008. From genes to ecosystems: the genetic basis of condensed tannins and their role in nutrient regulation in a Populus model system .. Ecosystems 11:1005 - 1020.

Bangert, R. K., E. V. Lonsdorf, G. M. Wimp, S. M. Shuster, D. Fischer, J. A. Schweitzer, G. J. Allan, J. K. Bailey, and T. G. Whitham. 2008. Genetic structure of a foundation species: scaling community phenotypes from the individual to the region.. Heredity 100:121 - 31.

Schweitzer, J. A., J. K. Bailey, D. G. Fischer, C. J. LeRoy, E. V. Lonsdorf, T. G. Whitham, and S. C. Hart. 2008. Plant-soil microorganism interactions: heritable relationship between plant genotype and associated soil microorganisms.. Ecology 89:773 - 81.

Evans, L. M., G. J. Allan, S. M. Shuster, S. A. Woolbright, and T. G. Whitham. 2008. Tree hybridization and genotypic variation drive cryptic speciation of a specialist mite herbivore.. Evolution; international journal of organic evolution 62:3027 - 40.

Whitham, T. G., and R. K. Bangert. 2007. Genetic assembly rules and community phenotypes. Evolutionary Ecology 21:549 - 560.

Classen, A. T., S. K. Chapman, T. G. Whitham, S. C. Hart, and G. W. Koch. 2007. Genetic‐based plant resistance and susceptibility traits to herbivory influence needle and root litter nutrient dynamics. Journal of Ecology 95.

Wimp, G. M., and T. G. Whitham. 2007. Host plants mediate ant-aphid mutualisms and their effects on community structure and diversity. 275 - 305 in T. Ohgushi, Craig, T. P., and Price, P. W. Ecological communities: plant mediation in indirect interaction webs. Cambridge University PressNew York, NY, USA.

Wimp, G. M., S. Wooley, R. K. Bangert, W. P. Young, G. D. Martinsen, P. Keim, B. Rehill, R. L. Lindroth, and T. G. Whitham. 2007. Plant genetics predicts intra-annual variation in phytochemistry and arthropod community structure.. Molecular ecology 16:5057 - 69.

LeRoy, C. J., T. G. Whitham, S. C. Wooley, and J. C. Marks. 2007. Within-species variation in foliar chemistry influences leaf-litter decomposition in a Utah river .. Journal of The North American Benthological Society 26:426 - 438.

Shuster, S. M., E. V. Lonsdorf, G. M. Wimp, J. K. Bailey, and T. G. Whitham. 2006. Community heritability measures the evolutionary consequences of indirect genetic effects on community structure.. Evolution; international journal of organic evolution 60:991 - 1003.

Rehill, B. J., T. G. Whitham, G. D. Martinsen, J. A. Schweitzer, J. K. Bailey, and R. L. Lindroth. 2006. Developmental trajectories in cottonwood phytochemistry.. Journal of chemical ecology 32:2269 - 85.

Fischer, F. G., S. C. Hart, B. J. Rehill, R. L. Lindroth, P. Keim, and T. Gand Whitham. 2006. Do high-tannin leaves require more roots?. Oecologia 149:668 - 75.

Gehring, C. A., R. C. Mueller, and T. G. Whitham. 2006. Environmental and genetic effects on the formation of ectomycorrhizal and arbuscular mycorrhizal associations in cottonwoods.. Oecologia 149:158 - 64.

Whitham, T. G., J. K. Bailey, J. A. Schweitzer, S. M. Shuster, R. K. Bangert, C. J. LeRoy, E. V. Lonsdorf, G. J. Allan, S. P. DiFazio, B. M. Potts, D. G. Fischer, C. A. Gehring, R. L. Lindroth, J. C. Marks, S. C. Hart, G. M. Wimp, and S. C. Wooley. 2006. A framework for community and ecosystem genetics: from genes to ecosystems.. Nature reviews. Genetics 7:510 - 23.