Menon, M., J. C.  Bagley, C. J.  Friedline, A. V.  Whipple, A. W.  Schoettle, A.  Leal-Senz, C.  Wehenkel, F.  Molina-Freaner, L.  Flores-Renter3?a, S.  M. Gonzalez-Elizondo, R. A.  Sniezko, S. A.  Cushman, K. M.  Waring, and A. J.  Eckert. 2018. The role of hybridization during ecological divergence of southwestern white pine (Pinus strobiformis) and limber pine (P. flexilis). Molecular Ecology 27:1245-1260.

Shirk, A. J., S. A.  Cushman, K. M.  Waring, C. A.  Wehenkel, A.  Leal-Sáenz, C.  Toney, and C. A.  Lopez-Sanchez. 2018. Southwestern white pine (Pinus strobiformis) species distribution models project a large range shift and contraction due to regional climatic changes. Forest Ecology and Managment 411:176-186.

Waring, K., S.  Cushman, A.  Eckert, L.  Flores-Renteria, R.  Sniezko, S.  Still, C.  Wehenkel, A. V.  Whipple, M.  Wing, E.  Boes, E.  Bucholz, J.  Burnett, A.  Castilla, J.  DaBell, C.  Friedline, C.  Garms, E.  Heck, J.  Johnson, A.  Leal-Saenz, B.  McTeague, M.  Menon, and E.  Moler. 2017. Blending Ecology and Evolution using Emerging Technologies to Determine Species Distributions with a Non-native Pathogen in a Changing Climate.. in  Forest Regeneration in Changing Climates. Corvallis, OR.

Waring, K., S.  Cushman, A.  Eckert, L.  Flores-Renteria, R.  Sniezko, C.  Still, C.  Wehenkel, A. V.  Whipple, M.  Wing, and P.  Yury. 2017. A holistic approach to genetic conservation in Pinus strobiformis.. 17 - 21 in  International Scientific Conference on Genetics of Populations Progress and Perspectives commemorating the 80th birthday of Academician Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu P Biological Sta. Zvenogorod Biological Station, Russia.

Whitham, T. G., C. A.  Gehring, H. M.  Bothwell, H. F.  Cooper, J. B.  Hull, G. J.  Allan, K. C.  Grady, L.  Markovchick, S. M.  Shuster, J.  Parker, A. E.  Cadmus, D. H.  Ikeda, and R. K.  Bangert. 2017. IN PRESS: Using the Southwest Experimental Garden Array to enhance riparian restoration in response to global change: Identifying and deploying genotypes and populations for current and future environments.  . in  In Riparian research and management: Past, present, future. . Gen. Tech. Rep. RMRS-GTR-inpress Fort Collins U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station.Fort Collins, CO, USA.

Grady, K. C., T. E.  Wood, T. E.  Kolb, E.  Hersch-Green, S. M.  Shuster, C. A.  Gehring, S. C.  Hart, G. J.  Allan, and T. G.  Whitham. 2017. Local biotic adaptation of trees and shrubs to plant neighbors.  . Okios 126.

Whitham, T. G. 2017. The reality of climate change and the need for genetics approaches in riparian, river and watershed restoration to maintain biodiversity in changing environments.. 22 - 27 in B. E.  Ralston and Sarr, D. A.. U.S. Geological Survey Open-File Report 2017-1091.

Gehring, C. A., C. M.  Sthultz, L.  Flores-Rentería, A. V.  Whipple, and T. G.  Whitham. 2017. Tree genetics defines fungal partner communities that may confer drought tolerance. . PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES 114.

Butterfield, B. J., A. L.  Camhi, R. L.  Rubin, and C. R.  Schwalm. 2016. Chapter Five ? Tradeoffs and Compatibilities Among Ecosystem Services : Biological, Physical and Economic Drivers of Multifunctionality. Advances in Ecological Research 54:207 - 243.

Gehring, C. A., M.  Hayer, L.  Flores-Renteria, A. L.  Krohn, E.  Schwartz, and P.  Dijkstra. 2016. Cheatgrass invasion alters the abundance and composition of dark septate fungal communities in sagebrush steppe.. Botany 9:481 - 491.

Hultine, K. R., K. C.  Grady, T. E.  Wood, S. M.  Shuster, J. C.  Stella, and T. G.  Whitham. 2016. Climate change perils for dioecious plant species.. Nature Plant  16109 109.

Waring, K., S.  Cushman, A.  Eckert, L.  Flores-Renteria, H.  Lintz, R.  Sniezko, C.  Still, C.  Wehenkel, A. V.  Whipple, and M.  Wing. 2016. Collaborative research for sustainable management of southwestern white pine.. 2 - 5 in  Society of American Foresters National Convention. Madison, Wisconsin, USA.

Ikeda, D. H., T. L.  Max, G. J.  Allan, M. K.  Lau, S. M.  Shuster, and T. G.  Whitham. 2016. Genetically informed ecological niche models improve climate change predictions. Global Change Biology.

Lau, M. K., A. R.  Keith, S. R.  Borrett, S. M.  Shuster, and T. G.  Whitham. 2016. Genotypic variation in foundation species generates network structure that may drive community dynamics and evolution.. Ecology 97:733 - 42.

Fischer, D. G., E.  Wimp, R. K.  Hersch-Green, C. J.  Bangert, J. K.  LeRoy, J. A.  Bailey, C.  Schweitzer, S. C.  Dirks, G. J.  Hart, and T. G.  Whitham. 2016. G.M. Allan, and Tree genetics strongly effect forest productivity, but intraspecific diversity-productivity relationships do not.. FUNCTIONAL ECOLOGY  DOI 1011111365243512733 31:520 - 529.

Clark, J. S., L.  Iverson, C. W.  Woodall, C. D.  Allen, D. M.  Bell, D. C.  Bragg, A. W.  D'Amato, F. W.  Davis, M. H.  Hersh, I.  Ibanez, S. T.  Jackson, S.  Matthews, N.  Pederson, M.  Peters, M. W.  Schwartz, K. M.  Waring, and N. E.  Zimmermann. 2016. The impacts of increasing drought on forest dynamics, structure, and biodiversity in the United States.. Global change biology 22:2329 - 52.

Morrissey, E. M., R. L.  Mau, E.  Schwartz, G.  J Caporaso, P.  Dijkstra, N.  van Gestel, B. J.  Koch, C. M.  Liu, M.  Hayer, T. A.  McHugh, J. C.  Marks, L. B.  Price, and B. A.  Hungate. 2016. Phylogenetic organization of bacterial activity.. The ISME journal 10:2336 - 40.

Castilla, A. R., R.  Sniezko, K.  Waring, S.  Cushman, A. J.  Eckert, L.  Flores, C.  Still, C.  Wehenkel, A.  Whipple, M.  Wing, T. E.  Kolb, and B. A.  Goodrich. 2016. Sustaining southwestern white pine by combining experimental work and genomic tools.

Morrissey, E. M., R. L.  Mau, E.  Schwartz, J. G.  Caporaso, P.  Dijkstra, T.  McHugh, J. C.  Marks, L. B.  Price, C. M.  Liu, and B. A.  Hungate. 2016. Taxon-specific microbial activities explain soil carbon cycling dynamics.. in  Ecological Society of America. ESAFort Lauderdale, Florida, USA.

Dijkstra, P., R. L.  Mau, T. A.  McHugh, B. J.  Koch, J. C.  Marks, K. - J.  van Groenigen, X. - J.  Liu, E.  Schwartz, E. M.  Morrissey, and B. A.  Hungate. 2016. Taxon-Specific Responses To Whole System Carbon Cycling In The Root Microbiome.. in  Phytobiomes from microbes to plant ecosystems. Santa Fe, New Mexicao, USA.

Barak, R. S., J. B.  Fant, A. T.  Kramer, and K. A.  Skogen. 2015. Assessing the value of potential ?native winners? for restoration of cheatgrass-invaded habitat.. Western North American Naturalist 75:58 - 69.

Morrissey, E. M., T. A.  McHugh, L.  Preteska, M.  Hayer, P.  Dijkstra, B. A.  Hungate, and E.  Schwartz. 2015. Dynamics of extracellular DNA decomposition and bacterial community composition in soil.. Soil Biology and Biochemistry 86:42 - 49.

Dijkstra, P., E.  Salpas, D.  Fairbanks, E. B.  Miller, S. B.  Hagerty, K. J.  van Groenigen, B. A.  Hungate, J. C.  Marks, G. W.  Koch, and E.  Schwartz. 2015. High carbon use efficiency in soil microbial communities is related to growth, not storage compound synthesis.. Soil Biology and Biochemistry 89:35 - 43.

Hagerty, S. B., K. J.  van Groenigen, E.  Schwartz, B. A.  Hungate, G. W.  Koch, and P.  Dijkstra. 2015. Influence of varying nitrogen availability on soil microbial growth efficiency.. ESABaltimore, MD, USA.

Mau, R. L., C. M.  Liu, M.  Aziz, E.  Schwartz, P.  Dijkstra, J. C.  Marks, L. B.  Price, P.  Keim, and B. A.  Hungate. 2015. Linking soil bacterial biodiversity and soil carbon stability.. The ISME journal 9:1477 - 80.

Knapp, J., M.  Elo, J.  Schaffer, and P. G.  Flikkema. 2014. Towards Intelligent Closed-Loop Workflows for Ecological Research Dynamic Data-driven Environmental Systems. in  Dynamic Data-driven Environmental Systems Science Conference (DyDESS). DyDESSCambridge, MA, USA.

Gehring, C. A., D.  Flores-Rentería, C. M.  Sthultz, T. M.  Leonard, L.  Flores-Renteria, A. V.  Whipple, and T. G.  Whitham. 2013. Plant genetics and interspecific competitive interactions determine ectomycorrhizal fungal community responses to climate change .. Molecular Ecology 23:1379 - 1391.

Whitham, T. G., C. A.  Gehring, L. J.  Lamit, T.  Wojtowicz, L. M.  Evans, A. R.  Keith, and D. Solance Smith. 2012. Community specificity: life and afterlife effects of genes.. Trends in plant science 17:271 - 81.

Bailey, J. K., J. A.  Schweitzer, B. M.  Fitzpatrick, M. A.  Genung, C. C.  Pregitzer, M.  Zinkgraf, T. G.  Whitham, A.  Keith, J. M.  Reilly-Wapstra, B. M.  Potts, B. J.  Rehill, C. J.  LeRoy, D. G.  Fischer, G. R.  Iason, M.  Dicke, and S. E.  Hartley. 2012. From genes to ecosystems: emerging concepts bridging ecological and evolutionary dynamics.. 269 - 286  (G. R.  Iason, Dicke, M., and Hartley, S. E., Eds.). Cambridge University PressNew York.

Lojewski, N. R., D. G.  Fischer, J. K.  Bailey, J. A.  Schweitzer, T. G.  Whitham, and S. C.  Hart. 2012. Genetic components to belowground carbon fluxes in a riparian forest ecosystem: a common garden approach.. The New phytologist 195:631 - 9.

Smith, D. S., J. A.  Schweitzer, P.  Turk, J. K.  Bailey, S. C.  Hart, S. M.  Shuster, and T. G.  Whitham. 2012. Soil-mediated local adaptation alters seedling survival and performance .. Plant and Soil 352:243 - 251.

Dijkstra, P., S. C.  Thomas, P. L.  Heinrich, G. W.  Koch, E.  Schwartz, and B. A.  Hungate. 2011. Effect of temperature on metabolic activity of intact microbial communities: Evidence for altered metabolic pathway activity but not for increased maintenance respiration and reduced carbon use efficiency. Soil Biology and Biochemistry 43:2023-2031.

Wymore, A. S., A. T. H.  Keeley, K. M.  Yturralde, M. L.  Schroer, C. R.  Propper, and T. G.  Whitham. 2011. Genes to ecosystems: exploring the frontiers of ecology with one of the smallest biological units.. The New phytologist 191:19 - 36.

Smith, D. S., J. K.  Bailey, S. M.  Shuster, and T. G.  Whitham. 2011. A geographic mosaic of trophic interactions and selection: trees, aphids and birds. Journal of Evolutionary Biology 24:422 - 429.

Michalet, R., S.  Xiao, B.  Touzard, D. S.  Smith, L. A.  Cavieres, R. M.  Callaway, and T. G.  Whitham. 2011. Phenotypic variation in nurse traits and community feedbacks define an alpine community.. Ecology letters 14:433 - 43.

Yamamoto, K., Y.  He, P. L.  Heinrich, A.  Orange, B.  Ruggeri, H.  Wilberger, and P. G.  Flikkema. 2010. WiSARDNet field-to-desktop: building a wireless cyberinfrastructure for environmental monitoring.. 101 - 108 in vanRiper C III, Wakeling, B. F., and Sisk, T. D. The Colorado Plateau IV: Shaping Conservation Through Science and Management. The University of Arizona PressTucson, AZ, USA.

Bailey, J. K., J. A.  Schweitzer, F.  Ubeda, J.  Koricheva, C. J.  LeRoy, M. D.  Madritch, B. J.  Rehill, R. K.  Bangert, D. G.  Fischer, G. J.  Allan, and T. G.  Whitham. 2009. From genes to ecosystems: a synthesis of the effects of plant genetic factors across levels of organization.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 364:1607 - 16.

Lojewski, N. R., D. G.  Fischer, J. K.  Bailey, J. A.  Schweitzer, T. G.  Whitham, and S. C.  Hart. 2009. Genetic basis of aboveground productivity in two native Populus species and their hybrids.. Tree physiology 29:1133 - 42.

Sthultz, C. M., T. G.  Whitham, K.  Kennedy, R.  Deckert, and C. A.  Gehring. 2009. Genetically based susceptibility to herbivory influences the ectomycorrhizal fungal communities of a foundation tree species.. The New phytologist 184:657 - 67.

Barbour, R. C., J. M.  O'Reilly-Wapstra, D. W.  De Little, G. J.  Jordan, D. A.  Steane, J. R.  Humphreys, J. K.  Bailey, T. G.  Whitham, and B. M.  Potts. 2009. A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences.. Ecology 90:1762 - 72.

Whitham, T. G., S. P.  DiFazio, J. A.  Schweitzer, S. M.  Shuster, G. J.  Allan, J. K.  Bailey, and S. A.  Woolbright. 2008. Extending genomics to natural communities and ecosystems.. Science 320:492 - 5.

Schweitzer, J. A., M. D.  Madritch, J. K.  Bailey, C. J.  LeRoy, D. G.  Fischer, B. J.  Rehill, R. L.  Lindroth, A. E.  Hagerman, S. C.  Wooley, S. C.  Hart, and T. G.  Whitham. 2008. From genes to ecosystems: the genetic basis of condensed tannins and their role in nutrient regulation in a Populus model system .. Ecosystems 11:1005 - 1020.

Bangert, R. K., E. V.  Lonsdorf, G. M.  Wimp, S. M.  Shuster, D.  Fischer, J. A.  Schweitzer, G. J.  Allan, J. K.  Bailey, and T. G.  Whitham. 2008. Genetic structure of a foundation species: scaling community phenotypes from the individual to the region.. Heredity 100:121 - 31.

Schweitzer, J. A., J. K.  Bailey, D. G.  Fischer, C. J.  LeRoy, E. V.  Lonsdorf, T. G.  Whitham, and S. C.  Hart. 2008. Plant-soil microorganism interactions: heritable relationship between plant genotype and associated soil microorganisms.. Ecology 89:773 - 81.

Evans, L. M., G. J.  Allan, S. M.  Shuster, S. A.  Woolbright, and T. G.  Whitham. 2008. Tree hybridization and genotypic variation drive cryptic speciation of a specialist mite herbivore.. Evolution; international journal of organic evolution 62:3027 - 40.

Flikkema, P. G., P. K.  Agarwal, J. S.  Clark, C.  Ellis, and A.  Gelfand. 2007. From Data Reverence to Data Relevance: Model-Mediated Wireless Sensing of the Physical Environment. 988 - 994 in G.  Albada, Dongarra, J., and Sloot, P. ICCS 2007, 7th International Conference. Springer Berlin/HeidelbergBeijing, China.

Shuster, S. M., E. V.  Lonsdorf, G. M.  Wimp, J. K.  Bailey, and T. G.  Whitham. 2006. Community heritability measures the evolutionary consequences of indirect genetic effects on community structure.. Evolution; international journal of organic evolution 60:991 - 1003.

Rehill, B. J., T. G.  Whitham, G. D.  Martinsen, J. A.  Schweitzer, J. K.  Bailey, and R. L.  Lindroth. 2006. Developmental trajectories in cottonwood phytochemistry.. Journal of chemical ecology 32:2269 - 85.

Whitham, T. G., J. K.  Bailey, J. A.  Schweitzer, S. M.  Shuster, R. K.  Bangert, C. J.  LeRoy, E. V.  Lonsdorf, G. J.  Allan, S. P.  DiFazio, B. M.  Potts, D. G.  Fischer, C. A.  Gehring, R. L.  Lindroth, J. C.  Marks, S. C.  Hart, G. M.  Wimp, and S. C.  Wooley. 2006. A framework for community and ecosystem genetics: from genes to ecosystems.. Nature reviews. Genetics 7:510 - 23.

Flikkema, P. G., P. K.  Agarwal, J. S.  Clark, C.  Ellis, and A.  Gelfand. 2006. Model-Driven Dynamic Control of Embedded Wireless Sensor Networks. 409 - 416 in V.  Alexandrov, van Albada, G., Sloot, P., and Dongarra, J. Computational Science - ICCS 2006, Lecture Notes in Computer Science, 6th International Conference. Springer Berlin/HeidelbergReading, UK.

Koch, G. W., P. M.  Vitousek, W. L.  Steffen, and B. H.  Walker. 1995. Terrestrial transects for global change research. Vegetation 121:53 - 65.