Heinrich, P. L., P. G.  Flikkema, D.  F, B.  EP, and A.  AJ. 2023. Toward cyber-eco systems: networked sensing, inference and control for ecological and agricultural systems.. 397-417 in  Handbook of dynamic data driven applications systems,. Springer, Cham. . Springer, Cham.

Waring, K., S.  Cushman, A.  Eckert, L.  Flores-Renteria, R.  Sniezko, S.  Still, C.  Wehenkel, A. V.  Whipple, M.  Wing, E.  Boes, E.  Bucholz, J.  Burnett, A.  Castilla, J.  DaBell, C.  Friedline, C.  Garms, E.  Heck, J.  Johnson, A.  Leal-Saenz, B.  McTeague, M.  Menon, and E.  Moler. 2017. Blending Ecology and Evolution using Emerging Technologies to Determine Species Distributions with a Non-native Pathogen in a Changing Climate.. in  Forest Regeneration in Changing Climates. Corvallis, OR.

Whitham, T. G., C. A.  Gehring, H. M.  Bothwell, H. F.  Cooper, J. B.  Hull, G. J.  Allan, K. C.  Grady, L.  Markovchick, S. M.  Shuster, J.  Parker, A. E.  Cadmus, D. H.  Ikeda, and R. K.  Bangert. 2017. IN PRESS: Using the Southwest Experimental Garden Array to enhance riparian restoration in response to global change: Identifying and deploying genotypes and populations for current and future environments.  . in  In Riparian research and management: Past, present, future. . Gen. Tech. Rep. RMRS-GTR-inpress Fort Collins U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station.Fort Collins, CO, USA.

Grady, K. C., T. E.  Wood, T. E.  Kolb, E.  Hersch-Green, S. M.  Shuster, C. A.  Gehring, S. C.  Hart, G. J.  Allan, and T. G.  Whitham. 2017. Local biotic adaptation of trees and shrubs to plant neighbors.  . Okios 126.

Knapp, J. D., M.  Middleton, P. L.  Heinrich, A. V.  Whipple, and P. G.  Flikkema. 2017. Support of distributed ecological experiments via closed-loop environmental control. in  2017 IEEE Conference on Technologies for Sustainability (SusTech), . IEEE SusTechPhoenix, AZ.

Lau, J. A., J. T.  Lennon, and K. D.  Heath. 2017. Trees harness the power of microbes to survive climate change. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES 114.

Compson, Z. G., T. G.  Hungate, N.  Whitham, P. E.  Meneses, T.  Busby, A. C.  Wojtowicz, K. J.  Ford, and J. C.  Marks. 2016. B.A. Adams, and Plant genotype influences aquatic-terrestrial ecosystem linkages through timing and composition of insect emergence.. ECOSPHERE   e01331 101002ecs21331 DOI 101002ecs21331 7.

Gehring, C. A., M.  Hayer, L.  Flores-Renteria, A. L.  Krohn, E.  Schwartz, and P.  Dijkstra. 2016. Cheatgrass invasion alters the abundance and composition of dark septate fungal communities in sagebrush steppe.. Botany 9:481 - 491.

Hultine, K. R., K. C.  Grady, T. E.  Wood, S. M.  Shuster, J. C.  Stella, and T. G.  Whitham. 2016. Climate change perils for dioecious plant species.. Nature Plant  16109 109.

Whipple, A. V., and L. M.  Holeski. 2016. Epigenetic Inheritance across the Landscape.. Frontiers in genetics 7:189.

Fischer, D. G., E.  Wimp, R. K.  Hersch-Green, C. J.  Bangert, J. K.  LeRoy, J. A.  Bailey, C.  Schweitzer, S. C.  Dirks, G. J.  Hart, and T. G.  Whitham. 2016. G.M. Allan, and Tree genetics strongly effect forest productivity, but intraspecific diversity-productivity relationships do not.. FUNCTIONAL ECOLOGY  DOI 1011111365243512733 31:520 - 529.

Clark, J. S., L.  Iverson, C. W.  Woodall, C. D.  Allen, D. M.  Bell, D. C.  Bragg, A. W.  D'Amato, F. W.  Davis, M. H.  Hersh, I.  Ibanez, S. T.  Jackson, S.  Matthews, N.  Pederson, M.  Peters, M. W.  Schwartz, K. M.  Waring, and N. E.  Zimmermann. 2016. The impacts of increasing drought on forest dynamics, structure, and biodiversity in the United States.. Global change biology 22:2329 - 52.

Kolb, T. E., K. C.  Grady, M. P.  Mcettrick, and A.  Herrero. 2016. Local-Scale Drought Adaptation of Ponderosa Pine Seedlings at Habitat Ecotones. Forest Science 62.

Morrissey, E. M., R. L.  Mau, E.  Schwartz, G.  J Caporaso, P.  Dijkstra, N.  van Gestel, B. J.  Koch, C. M.  Liu, M.  Hayer, T. A.  McHugh, J. C.  Marks, L. B.  Price, and B. A.  Hungate. 2016. Phylogenetic organization of bacterial activity.. The ISME journal 10:2336 - 40.

Rodman, K. C., A. J. S.  Meador, D. W.  Huffman, and K. M.  Waring. 2016. Reference Conditions and Historical Fine-Scale Spatial Dynamics in a Dry Mixed-Conifer  .. Forest Science 62:1 - 13.

Petrie, M. D., A. M.  Wildeman, J. B.  Bradford, R. M.  Hubbard, and W. K.  Lauenroth. 2016. A review of precipitation and temperature control on seedling emergence and establishment for ponderosa and lodgepole pine forest regeneration.. Forest Ecology and Management 361:328 - 338.

Haskins, K. E. 2016. The Southwest Experimental Garden Array: A Tool for Examining Plant Responses to Climate Change.. in  Public Garden, the newsletter of The American Public Gardens Association. Flagstaff, Arizona, USA.

Haskins, K. E. 2016. ?The Southwest Experimental Garden Array and climate change research: Forecasting our floral future.. in  Invited Guest Lecture: The Arboretum at Flagstaff 35th Anniversary Lecture Series. Flagstaff, AZ, USA.

Morrissey, E. M., R. L.  Mau, E.  Schwartz, J. G.  Caporaso, P.  Dijkstra, T.  McHugh, J. C.  Marks, L. B.  Price, C. M.  Liu, and B. A.  Hungate. 2016. Taxon-specific microbial activities explain soil carbon cycling dynamics.. in  Ecological Society of America. ESAFort Lauderdale, Florida, USA.

Dijkstra, P., R. L.  Mau, T. A.  McHugh, B. J.  Koch, J. C.  Marks, K. - J.  van Groenigen, X. - J.  Liu, E.  Schwartz, E. M.  Morrissey, and B. A.  Hungate. 2016. Taxon-Specific Responses To Whole System Carbon Cycling In The Root Microbiome.. in  Phytobiomes from microbes to plant ecosystems. Santa Fe, New Mexicao, USA.

Lamit, L. J., L. M.  Holeski, L.  Flores-Renteria, T. G.  Whitham, and C. A.  Gehring. 2016. Tree genotype influences ectomycorrhizal fungal community structure: Ecological and evolutionary implications. FUNGAL ECOLOGY 24:124 - 134.

Lamit, L. J., L. M.  Holeski, L.  Flores-Rentería, T. G.  Whitham, and C. A.  Gehring. 2016. Tree genotype influences ectomycorrhizal fungal community structure: ecological and evolutionary implications. . Fungal Ecology 24.

Morrissey, E. M., T. A.  McHugh, L.  Preteska, M.  Hayer, P.  Dijkstra, B. A.  Hungate, and E.  Schwartz. 2015. Dynamics of extracellular DNA decomposition and bacterial community composition in soil.. Soil Biology and Biochemistry 86:42 - 49.

Dijkstra, P., E.  Salpas, D.  Fairbanks, E. B.  Miller, S. B.  Hagerty, K. J.  van Groenigen, B. A.  Hungate, J. C.  Marks, G. W.  Koch, and E.  Schwartz. 2015. High carbon use efficiency in soil microbial communities is related to growth, not storage compound synthesis.. Soil Biology and Biochemistry 89:35 - 43.

Hagerty, S. B., K. J.  van Groenigen, E.  Schwartz, B. A.  Hungate, G. W.  Koch, and P.  Dijkstra. 2015. Influence of varying nitrogen availability on soil microbial growth efficiency.. ESABaltimore, MD, USA.

Mau, R. L., C. M.  Liu, M.  Aziz, E.  Schwartz, P.  Dijkstra, J. C.  Marks, L. B.  Price, P.  Keim, and B. A.  Hungate. 2015. Linking soil bacterial biodiversity and soil carbon stability.. The ISME journal 9:1477 - 80.

Hultine, K. R., D. W.  Bean, T. L.  Dudley, and C. A.  Gehring. 2015. Species Introductions and Their Cascading Impacts on Biotic Interactions in desert riparian ecosystems.. Integrative and comparative biology 55:587 - 601.

Grady, K. C., D. C.  Laughlin, S. M.  Ferrier, T. E.  Kolb, S. C.  Hart, G. J.  Allan, and T. G.  Whitham. 2013. Conservative leaf economic traits correlate with fast growth of genotypes of a foundation riparian species near the thermal maximum extent of its geographic range .. Functional Ecology 27:427 - 438.

Holeski, L. M., K.  Keefover-Ring, D.  M Bowers, Z. T.  Harnenz, and R. L.  Lindroth. 2013. Patterns of phytochemical variation in Mimulus guttatus (yellow monkeyflower).. Journal of chemical ecology 39:525 - 36.

Wu, Z., , G. W.  Koch, and B.  Hungate. 2012. Biogeochemical and ecological feedbacks in grassland responses to warming. Nature Climate Change 2:458 - 461.

Bailey, J. K., J. A.  Schweitzer, B. M.  Fitzpatrick, M. A.  Genung, C. C.  Pregitzer, M.  Zinkgraf, T. G.  Whitham, A.  Keith, J. M.  Reilly-Wapstra, B. M.  Potts, B. J.  Rehill, C. J.  LeRoy, D. G.  Fischer, G. R.  Iason, M.  Dicke, and S. E.  Hartley. 2012. From genes to ecosystems: emerging concepts bridging ecological and evolutionary dynamics.. 269 - 286  (G. R.  Iason, Dicke, M., and Hartley, S. E., Eds.). Cambridge University PressNew York.

Lojewski, N. R., D. G.  Fischer, J. K.  Bailey, J. A.  Schweitzer, T. G.  Whitham, and S. C.  Hart. 2012. Genetic components to belowground carbon fluxes in a riparian forest ecosystem: a common garden approach.. The New phytologist 195:631 - 9.

Holeski, L. M., M. L.  Hillstrom, T. G.  Whitham, and R. L.  Lindroth. 2012. Relative importance of genetic, ontogenetic, induction, and seasonal variation in producing a multivariate defense phenotype in a foundation tree species.. Oecologia 170:695 - 707.

Smith, D. S., J. A.  Schweitzer, P.  Turk, J. K.  Bailey, S. C.  Hart, S. M.  Shuster, and T. G.  Whitham. 2012. Soil-mediated local adaptation alters seedling survival and performance .. Plant and Soil 352:243 - 251.

Flikkema, P. G., K. R.  Yamamoto, S.  Boegli, C.  Porter, and P. L.  Heinrich. 2012. Towards Cyber-Eco Systems: Networked Sensing, Inference and Control for Distributed Ecological Experiments. in  IEEE International Conference on Cyber, Physical and Social Computing.

Ferrier, S. M., R. K.  Bangert, E. I.  Hersch-Green, J. K.  Bailey, and G. J.  Allan. 2012. Unique arthropod communities on different host-plant genotypes results in greater arthropod diversity. Arthropod-Plant Interactions 6:187 - 195.

Dijkstra, P., S. C.  Thomas, P. L.  Heinrich, G. W.  Koch, E.  Schwartz, and B. A.  Hungate. 2011. Effect of temperature on metabolic activity of intact microbial communities: Evidence for altered metabolic pathway activity but not for increased maintenance respiration and reduced carbon use efficiency. Soil Biology and Biochemistry 43:2023-2031.

Grady, K. C., S. M.  Ferrier, T. E.  Kolb, S. C.  Hart, G. A.  Allan, and T. G.  Whitham. 2011. Genetic variation in productivity of foundation riparian species at the edge of their distribution: implications for restoration and assisted migration in a warming climate .. Global Change Biology 17:3724 - 3735.

Lamit, L. J., M. A.  Bowker, L. M.  Holeski, R. R.  Næsborg, S. C.  Wooley, M.  Zinkgraf, R. L.  Lindroth, T. G.  Whitham, and C. A.  Gehring. 2011. Genetically-based trait variation within a foundation tree species influences a dominant bark lichen .. Fungal Ecology 4:103 - 109.

Axelsson, E. P., J.  Hjältén, T. G.  Whitham, R.  Julkunen-Tiitto, and G.  Pilate. 2011. Leaf ontogeny interacts with Bt modification to affect innate resistance in GM aspens. Chemoecology 21:161 - 169.

Li, C., P. G.  Flikkema, and S. L.  Howard. 2011. Progressive coding and iterative source-channel decoding in wireless data gathering networks .. Dec 5 - 9 in  Proceedings of 2011 IEEE Global Telecommunications Conference. IEE GLOBECOMHouston, TX, USA.

Wu, Z., G. W.  Koch, P.  Dijkstra, M. A.  Bowker, and B.  Hungate. 2011. Responses of ecosystem carbon cycling to climate change treatments along an elevation gradient. Ecosystems 14:1066 - 1080.

Yamamoto, K., Y.  He, P. L.  Heinrich, A.  Orange, B.  Ruggeri, H.  Wilberger, and P. G.  Flikkema. 2010. WiSARDNet field-to-desktop: building a wireless cyberinfrastructure for environmental monitoring.. 101 - 108 in vanRiper C III, Wakeling, B. F., and Sisk, T. D. The Colorado Plateau IV: Shaping Conservation Through Science and Management. The University of Arizona PressTucson, AZ, USA.

Marks, J. C., G. A.  Haden, B. A.  Harrop, E. G.  Reese, J. L.  Keams, M. E.  Watwood, and T. G.  Whitham. 2009. Genetic and environmental controls of microbial communities on leaf litter in streams .. Freshwater Biology 54:2616 - 2627.

Lojewski, N. R., D. G.  Fischer, J. K.  Bailey, J. A.  Schweitzer, T. G.  Whitham, and S. C.  Hart. 2009. Genetic basis of aboveground productivity in two native Populus species and their hybrids.. Tree physiology 29:1133 - 42.

Barbour, R. C., J. M.  O'Reilly-Wapstra, D. W.  De Little, G. J.  Jordan, D. A.  Steane, J. R.  Humphreys, J. K.  Bailey, T. G.  Whitham, and B. M.  Potts. 2009. A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences.. Ecology 90:1762 - 72.

Holeski, L. M., M. J. C.  Kearsley, and T. G.  Whitham. 2009. Separating ontogenetic and environmental determination of resistance to herbivory in cottonwood.. Ecology 90:2969 - 73.

He, Y., and P. G.  Flikkema. 2009. System-level characterization of single-chip radios for wireless sensor network applications .. in  Proceedings of the IEEE 10th Annual Wireless and Microwave Technology Conference. IEEEClearwater, Florida, USA.

Schweitzer, J. A., M. D.  Madritch, J. K.  Bailey, C. J.  LeRoy, D. G.  Fischer, B. J.  Rehill, R. L.  Lindroth, A. E.  Hagerman, S. C.  Wooley, S. C.  Hart, and T. G.  Whitham. 2008. From genes to ecosystems: the genetic basis of condensed tannins and their role in nutrient regulation in a Populus model system .. Ecosystems 11:1005 - 1020.

Schweitzer, J. A., J. K.  Bailey, D. G.  Fischer, C. J.  LeRoy, E. V.  Lonsdorf, T. G.  Whitham, and S. C.  Hart. 2008. Plant-soil microorganism interactions: heritable relationship between plant genotype and associated soil microorganisms.. Ecology 89:773 - 81.

Classen, A. T., S. K.  Chapman, T. G.  Whitham, S. C.  Hart, and G. W.  Koch. 2007. Genetic?based plant resistance and susceptibility traits to herbivory influence needle and root litter nutrient dynamics. Journal of Ecology 95.

Fischer, F. G., S. C.  Hart, B. J.  Rehill, R. L.  Lindroth, P.  Keim, and T. Gand Whitham. 2006. Do high-tannin leaves require more roots?. Oecologia 149:668 - 75.

Whitham, T. G., J. K.  Bailey, J. A.  Schweitzer, S. M.  Shuster, R. K.  Bangert, C. J.  LeRoy, E. V.  Lonsdorf, G. J.  Allan, S. P.  DiFazio, B. M.  Potts, D. G.  Fischer, C. A.  Gehring, R. L.  Lindroth, J. C.  Marks, S. C.  Hart, G. M.  Wimp, and S. C.  Wooley. 2006. A framework for community and ecosystem genetics: from genes to ecosystems.. Nature reviews. Genetics 7:510 - 23.