TY - THES T1 - Getting to the Root of Change: How Plants Respont to Novel Climates, Soils, and Soil Biota T2 - Forestry Y1 - 2019 A1 - Michael J. Remke ED - Matthew Bowker ED - Nancy Johnson ED - Catherine Gehring ED - Thomas Kolb KW - arbuscular mycorrhizal KW - climate change KW - ecto-mycorrhizal KW - Plants KW - soil biota KW - soils AB -

Global climate change is having profound and widespread effects on plant growth and survival. For the southwestern United States, warmer temperatures, more variable precipitation and more extreme droughts are expected. As plant populations experience these changes they may adapt and persist in place or may experience increasing environmental stress, eventually leading to mortality. An interesting component of environmental change is that different edaphic conditions may mitigate or exacerbate changes in the environment. As an example, coarse soils with low water holding capacity may exacerbate a change in water availability. Additionally, soil biota may play a critical role in facilitating plant survival during environmental change. Mycorrhizal fungi and plant growth promoting rhizobacteria both have been shown to have an impact on plant water uptake and physiological regulation. Interestingly, plants migrating to new locations maybe experiencing different novel environments by migrating across edaphic boundaries. Novel edaphic environments may have vastly different physical and chemical properties to which plant populations are adapted to. Furthermore, plant migration often occurs independently of the migration of associated soil microbes, including mycorrhizal fungi. Both arbuscular mycorrhizal (AM) fungi and ecto-mycorrhizal (EM) fungi play important roles in plant nutrient and water uptake. While plant responses to changes in climate, or even soils are fairly well understood, few studies have examined the impact of simultaneous change in climate, soil, and soil biota on plant performance To better understand adaptation to novel environments, the grass Bouteloua gracilis was grown at six field sites: two natal source sites, a +2°C site, a +3°C site, a -2°C site and -3°C site where the warmer sites simulate in situ warming and precipitation changes whereas the cooler sites simulate plant migration. In these papers we define home as soil communities from the plants site of origin, and away as soil communities from the transplant site. Plants at all of the transplant sites were then grown in the following combinations of soil and soil biota: 1) home soil, home soil biota, 2) away soil, home soil biota, 3) home soil, away soil biota and 4) away soil, away soil biota. Home refers to soil or soil biota from the same site as the plant, whereas away represents soil or soil biota from the transplant site. We found plants generally grew more in cooler/wetter environments than in warm/dry environments. In warm/dry environments, we also found that home soil biota generally facilitated plant growth and plants were larger than those grown with away soil biota. Away soils originating from one site in particular, had a dramatic negative effect on plant growth. In general, our results demonstrate that warmer temperatures have a negative effect on plant growth that can be mitigated partly by plant associated soil biota. In order to better understand plant physiological responses to changes in environment, we conducted a similar, parallel study with the tree Pinus ponderosa where we grew P. ponderosa at three field sites: one natal source site, a +2°C site and a -2°C site. We used the same treatment combinations described above. We monitored plant growth and leaf physiology metrics during the monsoon season. Trees grown at the +2°C site grew as large as those grown at the home site when they had their home soil biota, but not when they had their away soil biota. Trees with their home soil biota maintained nearly 2× the maximum net photosynthetic rate and stomatal conductance rate than those grown with their away soil biota. These results imply that home soil biota play a critical role in either water uptake or physiological regulation and away soil biota do not have the same effect. Lastly, we conducted a third experiment to more closely examine how the plant symbiosis with home soil biota influence plant growth differs from that with away soil biota. In this experiment, we grew the grass Bouteloua gracilis from a relatively wet and relatively dry site with either home or away soil biota. We then subjected plants to a watering regime that simulated or moderate drying or extreme drying and monitored plant growth. At the termination of the experiment we recorded fungal structures colonizing plant roots. We observed that home plant-soil biota combinations grew larger and had a greater portion of roots colonized by AM fungi structures for nutrient exchange and uptake (hyphae and arbuscules). In contrast, away plant-soil biota combinations resulted in a greater portion of roots colonized by less beneficial AM fungi structures that are used for fungal carbon storage (vesicles). These results may indicate that home plant-fungal pairings generally have greater mutualistic function, partially due to fungal allocation. Plants responding to changes in their environment will be exposed to a wide array of scenarios and thus exhibit a wide range of responses. In general, our studies indicate that soil biota mitigate some of the negative effects of warmer drier environments on plant growth. We also demonstrate that plants migrating to novel cooler and wetter environments are much less dependent on these soil biota, however, edaphic boundaries are likely to be a barrier to plant growth with certain soil environments a greater barrier than others.

JF - Forestry PB - Northern Arizona University CY - Flagstaff, Arizona, USA VL - Doctor of Philosophy in Forest Science UR - https://www.sega.nau.edu/sites/default/files/Getting_to_the_Root_of_Change.pdf ER - TY - JOUR T1 - Genetics-based interactions of foundation species affect community diversity, stability and network structure. JF - Proceedings of the Royal Society B Biological ... Y1 - 2017 A1 - AR Keith A1 - JK Bailey A1 - Lau,MK A1 - TG Whitham AB - react-text: 446 A central issue in the field of community genetics is the expectation that trait variation among genotypes play a defining role in structuring associated species and in forming community phenotypes. Quantifying the existence of such community phenotypes in two common garden environments also has important consequences for our understanding of gene-by-environment interactions at the community... /react-text react-text: 447 /react-text [Show full abstract] VL - 284 UR - http://europepmc.org/abstract/MED/28490623 IS - 1854 ER - TY - JOUR T1 - Genetic variation in NIN1 and C/VIF1 genes is significantly associated with Populus angustifolia resistance to a galling herbivore, Pemphigus betae. JF - Journal of insect physiology Y1 - 2016 A1 - Zinkgraf,Matthew S A1 - Meneses,Nashelly A1 - Whitham,Thomas G A1 - Allan,Gerard J KW - Animals KW - Aphids KW - beta-Fructofuranosidase KW - Enzyme Inhibitors KW - Genes, Plant KW - Genetic Variation KW - Haplotypes KW - Herbivory KW - Plant Immunity KW - Plant Proteins KW - Plant Tumors KW - Polymorphism, Single Nucleotide KW - Populus AB -

The identification of genes associated with ecologically important traits provides information on the potential genetic mechanisms underlying the responses of an organism to its natural environment. In this study, we investigated the genetic basis of host plant resistance to the gall-inducing aphid, Pemphigus betae, in a natural population of 154 narrowleaf cottonwoods (Populus angustifolia). We surveyed genetic variation in two genes putatively involved in sink-source relations and a phenology gene that co-located in a previously identified quantitative trait locus for resistance to galling. Using a candidate gene approach, three major findings emerged. First, natural variation in tree resistance to galling was repeatable. Sampling of the same tree genotypes 20 years after the initial survey in 1986 show that 80% of the variation in resistance was due to genetic differences among individuals. Second, we identified significant associations at the single nucleotide polymorphism and haplotype levels between the plant neutral invertase gene NIN1 and tree resistance. Invertases are a class of sucrose hydrolyzing enzymes and play an important role in plant responses to biotic stress, including the establishment of nutrient sinks. These associations with NIN1 were driven by a single nucleotide polymorphism (NIN1_664) located in the second intron of the gene and in an orthologous sequence to two known regulatory elements. Third, haplotypes from an inhibitor of invertase (C/VIF1) were significantly associated with tree resistance. The identification of genetic variation in these two genes provides a starting point to understand the possible genetic mechanisms that contribute to tree resistance to gall formation. We also build on previous work demonstrating that genetic differences in sink-source relationships of the host influence the ability of P. betae to manipulate the flow of nutrients and induce a nutrient sink.

VL - 84 SN - 0022-1910 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=26518288&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. ER - TY - JOUR T1 - Genetic variation in Pinus strobiformis growth and drought tolerance from southwestern US populations. JF - Tree physiology Y1 - 2016 A1 - Goodrich,Betsy A A1 - Waring,Kristen M A1 - Kolb,Thomas E KW - Adaptation, Physiological KW - Droughts KW - Genetic Variation KW - Pinus KW - Southwestern United States KW - Trees AB -

The persistence of some tree species is threatened by combinations of novel abiotic and biotic stressors. To examine the hypothesis that Pinus strobiformis Engelm., a tree threatened by an invasive forest pathogen and a changing climate, exhibits intraspecific genetic variation in adaptive traits, we conducted a common garden study of seedlings at one location with two watering regimes using 24 populations. Four key findings emerged: (i) growth and physiological traits were low to moderately differentiated among populations but differentiation was high for some traits in water-stressed populations; (ii) seedlings from warmer climates grew larger, had higher stomatal density and were more water-use efficient (as measured by the carbon isotope ratio) than populations from colder climates; (iii) seedlings from the northern edge of the species' distribution had lower water-use efficiency, higher stomatal conductance, slower growth and longer survival in a lethal drought experiment compared with seedlings from more southern populations; and (iv) based on non-metric multidimensional scaling analyses, populations clustered into southern and northern groups, which did not correspond to current seed transfer zones. Our discovery of a clinal geographic pattern of genetic variation in adaptive traits of P. strobiformis seedlings will be useful in developing strategies to maintain the species during ongoing climate change and in the face of an invasive pathogen.

VL - 36 SN - 0829-318X UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=27344065&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 10 ER - TY - JOUR T1 - Genetically informed ecological niche models improve climate change predictions JF - Global Change Biology Y1 - 2016 A1 - DH Ikeda A1 - Max,TL A1 - GJ Allan A1 - Lau,MK A1 - SM Shuster A1 - TG Whitham ER - TY - JOUR T1 - Genotypic variation in foundation species generates network structure that may drive community dynamics and evolution. JF - Ecology Y1 - 2016 A1 - Lau,Matthew K A1 - Keith,Arthur R A1 - Borrett,Stuart R A1 - Shuster,Stephen M A1 - Whitham,Thomas G KW - Animals KW - Biological Evolution KW - Computer Simulation KW - Food Chain KW - Genetic Variation KW - Genotype KW - Insecta KW - Models, Biological KW - Populus AB -

Although genetics in a single species is known to impact whole communities, little is known about how genetic variation influences species interaction networks in complex ecosystems. Here, we examine the interactions in a community of arthropod species on replicated genotypes (clones) of a foundation tree species, Populus angustifolia James (narrowleaf cottonwood), in a long-term, common garden experiment using a bipartite "genotype-species" network perspective. We combine this empirical work with a simulation experiment designed to further investigate how variation among individual tree genotypes can impact network structure. Three findings emerged: (1) the empirical "genotype-species network" exhibited significant network structure with modularity being greater than the highly conservative null model; (2) as would be expected given a modular network structure, the empirical network displayed significant positive arthropod co-occurrence patterns; and (3) furthermore, the simulations of "genotype-species" networks displayed variation in network structure, with modularity in particular clearly increasing, as genotypic variation increased. These results support the conclusion that genetic variation in a single species contributes to the structure of ecological interaction networks, which could influence eco-ogical dynamics (e.g., assembly and stability) and evolution in a community context.

VL - 97 SN - 0012-9658 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=27197399&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 3 ER - TY - JOUR T1 - G.M. Allan, and Tree genetics strongly effect forest productivity, but intraspecific diversity-productivity relationships do not. JF - FUNCTIONAL ECOLOGY DOI 1011111365243512733 Y1 - 2016 A1 - Fischer,DG A1 - Wimp,E A1 - Hersch-Green,RK A1 - Bangert,CJ A1 - LeRoy,JK A1 - Bailey,JA A1 - Schweitzer,C A1 - Dirks,SC A1 - Hart,GJ A1 - TG Whitham VL - 31 N1 - [Original String]:Fischer, D.G., G.M. Wimp, E. Hersch-Green, R.K. Bangert, C.J. LeRoy, J.K. Bailey, J.A. Schweitzer, C. Dirks, S.C. Hart, G.J. Allan, and Whitham, T.G. 2016. Tree genetics strongly effect forest productivity, but intraspecific diversity-productivity relationships do not. FUNCTIONAL ECOLOGY 31:520-529. DOI: 10.1111/1365-2435.12733 ER - TY - JOUR T1 - A genetics-based universal community transfer function for predicting the impacts of climate change on future communities. JF - Functional Ecology Y1 - 2014 A1 - DH Ikeda A1 - Bothwell,HM A1 - Lau,MK A1 - O’Neill,GA A1 - Grady,KC A1 - TG Whitham KW - Acetamides KW - Amines KW - Cyclohexanecarboxylic Acids KW - Dried Blood Spot Testing KW - Fluoroacetates KW - gamma-Aminobutyric Acid KW - Gas Chromatography-Mass Spectrometry KW - Humans KW - Linear Models KW - Reproducibility of Results KW - Sensitivity and Specificity KW - Spectrometry, Mass, Electrospray Ionization KW - Tandem Mass Spectrometry KW - Trimethylsilyl Compounds KW - Valproic Acid VL - 28 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=24889681&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. ER - TY - JOUR T1 - Genetic basis of pathogen community structure for foundation tree species in a common garden and in the wild . JF - Journal of Ecology Y1 - 2013 A1 - Busby,PE A1 - Newcombe,G A1 - Dirzo,R A1 - TG Whitham VL - 101 N1 - [Original String]:Busby PE, Newcombe G, Dirzo R, Whitham TG. 2013. Genetic basis of pathogen community structure for foundation tree species in a common garden and in the wild . Journal of Ecology 101:867-877. ER - TY - JOUR T1 - Genetic components to belowground carbon fluxes in a riparian forest ecosystem: a common garden approach. JF - The New phytologist Y1 - 2012 A1 - Lojewski,Nathan R A1 - Fischer,Dylan G A1 - JK Bailey A1 - Jennifer A Schweitzer A1 - Whitham,Thomas G A1 - Stephen C Hart KW - Carbon KW - Carbon Cycle KW - Carbon Dioxide KW - Chimera KW - Crosses, Genetic KW - Ecosystem KW - Genetic Variation KW - Genotype KW - Populus KW - Soil KW - Trees AB -

Soil carbon dioxide (CO(2)) efflux is a major component of terrestrial carbon (C) cycles; yet, the demonstration of covariation between overstory tree genetic-based traits and soil C flux remains a major frontier in understanding biological controls over soil C. Here, we used a common garden with two native tree species, Populus fremontii and P. angustifolia, and their naturally occurring hybrids to test the predictability of belowground C fluxes on the basis of taxonomic identity and genetic marker composition of replicated clones of individual genotypes. Three patterns emerged: soil CO(2) efflux and ratios of belowground flux to aboveground productivity differ by as much as 50-150% as a result of differences in clone identity and cross type; on the basis of Mantel tests of molecular marker matrices, we found that c. 30% of this variation was genetically based, in which genetically similar trees support more similar soil CO(2) efflux under their canopies than do genetically dissimilar trees; and the patterns detected in an experimental garden match observations in the wild, and seem to be unrelated to measured abiotic factors. Our findings suggest that the genetic makeup of the plants growing on soil has a significant influence on the release of C from soils to the atmosphere.

VL - 195 SN - 0028-646X UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=22642377&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 3 ER - TY - JOUR T1 - Genes to ecosystems: exploring the frontiers of ecology with one of the smallest biological units. JF - The New phytologist Y1 - 2011 A1 - Wymore,Adam S A1 - Keeley,Annika T H A1 - Yturralde,Kasey M A1 - Schroer,Melanie L A1 - Propper,Catherine R A1 - Whitham,Thomas G KW - Animals KW - Cell Respiration KW - climate change KW - Ecosystem KW - Environmental Pollution KW - Female KW - Fishes KW - Gene Expression KW - Haplotypes KW - Humans KW - Introduced Species KW - Male KW - Plants KW - Population Dynamics KW - Sciuridae AB -

Genes and their expression levels in individual species can structure whole communities and affect ecosystem processes. Although much has been written about community and ecosystem phenotypes with a few model systems, such as poplar and goldenrod, here we explore the potential application of a community genetics approach with systems involving invasive species, climate change and pollution. We argue that community genetics can reveal patterns and processes that otherwise might remain undetected. To further facilitate the community genetics or genes-to-ecosystem concept, we propose four community genetics postulates that allow for the conclusion of a causal relationship between the gene and its effect on the ecosystem. Although most current studies do not satisfy these criteria completely, several come close and, in so doing, begin to provide a genetic-based understanding of communities and ecosystems, as well as a sound basis for conservation and management practices.

VL - 191 SN - 0028-646X UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21631507&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 1 ER - TY - JOUR T1 - A genetic basis for the manipulation of sink-source relationships by the galling aphid Pemphigus batae. JF - Oecologia Y1 - 2011 A1 - Compson,Zacchaeus G A1 - Larson,Katherine C A1 - Zinkgraf,Matthew S A1 - Whitham,Thomas G KW - Animals KW - Aphids KW - Carbon Radioisotopes KW - Ecosystem KW - Feeding Behavior KW - Host-Parasite Interactions KW - Phloem KW - Plant Leaves KW - Plant Shoots KW - Populus AB -

We examined how the galling aphid Pemphigus batae manipulates resource translocation patterns of resistant and susceptible narrowleaf cottonwood Populus angustifolia. Using carbon-14 ((14)C)-labeling experiments in common garden trials, five patterns emerged. First, although aphid galls on resistant and susceptible genotypes did not differ in their capacity to intercept assimilates exported from the leaf they occupied, aphids sequestered 5.8-fold more assimilates from surrounding leaves on susceptible tree genotypes compared to resistant genotypes. Second, gall sinks on the same side of a shoot as a labeled leaf were 3.4-fold stronger than gall sinks on the opposite side of a shoot, which agrees with patterns of vascular connections among leaves of the same shoot (orthostichy). Third, plant genetic-based traits accounted for 26% of the variation in sink strength of gall sinks and 41% of the variation in sink strength of a plant's own bud sinks. Fourth, tree susceptibility to aphid gall formation accounted for 63% of the variation in (14)C import, suggesting strong genetic control of sink-source relationships. Fifth, competition between two galls was observed on a susceptible but not a resistant tree. On the susceptible tree distal aphids intercepted 1.5-fold more (14)C from the occupied leaf than did basal aphids, but basal aphids compensated for the presence of a distal competitor by almost doubling import to the gall from surrounding leaves. These findings and others, aimed at identifying candidate genes for resistance, argue the importance of including plant genetics in future studies of the manipulation of translocation patterns by phytophageous insects.

VL - 167 SN - 0029-8549 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21667296&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 3 ER - TY - JOUR T1 - Genetic variation in productivity of foundation riparian species at the edge of their distribution: implications for restoration and assisted migration in a warming climate . JF - Global Change Biology Y1 - 2011 A1 - Grady,KC A1 - Ferrier,SM A1 - TE Kolb A1 - Hart,SC A1 - Allan,GA A1 - TG Whitham VL - 17 N1 - [Original String]:Grady KC, Ferrier SM, Kolb TE, Hart SC, Allan GA, Whitham TG. 2011. Genetic variation in productivity of foundation riparian species at the edge of their distribution: implications for restoration and assisted migration in a warming climate . Global Change Biology 17:3724-3735. ER - TY - JOUR T1 - Genetically-based trait variation within a foundation tree species influences a dominant bark lichen . JF - Fungal Ecology Y1 - 2011 A1 - Lamit,LJ A1 - MA Bowker A1 - LM Holeski A1 - Næsborg,RR A1 - Wooley,SC A1 - M Zinkgraf A1 - Lindroth,RL A1 - TG Whitham A1 - CA Gehring VL - 4 N1 - [Original String]:Lamit LJ, Bowker MA, Holeski LM, Næsborg RR, Wooley SC, Zinkgraf M, Lindroth RL, Whitham TG, Gehring CA. 2011. Genetically-based trait variation within a foundation tree species influences a dominant bark lichen . Fungal Ecology 4:103-109. ER - TY - JOUR T1 - A geographic mosaic of trophic interactions and selection: trees, aphids and birds JF - Journal of Evolutionary Biology Y1 - 2011 A1 - Smith,DS A1 - JK Bailey A1 - SM Shuster A1 - TG Whitham KW - Administration, Inhalation KW - Administration, Intranasal KW - Aerosols KW - Animals KW - Female KW - Influenza A Virus, H3N2 Subtype KW - Lung KW - Lung Diseases KW - Mice KW - Mice, Inbred BALB C KW - Orthomyxoviridae Infections VL - 24 SN - 1010-061X UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21449723&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 2 ER - TY - JOUR T1 - A genetic basis to community repeatability and stability. JF - Ecology Y1 - 2010 A1 - Keith,Arthur R A1 - JK Bailey A1 - Whitham,Thomas G KW - Animals KW - Arthropods KW - Biological Evolution KW - Ecosystem KW - Genotype KW - Populus AB -

Recent studies have shown that genetically based traits of plants can structure associated arthropod and microbial communities, but whether the effects are consistent and repeatable across years is unknown. If communities are both heritable (i.e., related individuals tend to support similar communities) and repeatable (i.e., the same patterns observed over multiple years), then plant genetics may also affect community properties previously thought to be emergent, such as "stability." Using replicated clones of narrowleaf cottonwood (Populus angustifolia) and examining an arthropod community of 103 species, we found that (1) individual tree genotypes supported significantly different arthropod communities, which exhibited broad-sense heritability; (2) these findings were highly repeatable over three consecutive years (repeatability = 0.91) indicating that community responses to individual tree genotypes are consistent from year to year; (3) differences among tree genotypes in community stability (i.e., changes in community composition over multiple years) exhibited broad-sense heritability (H(C)2 = 0.32). In combination, these findings suggest that an emergent property such as stability can be genetically based and thus subject to natural selection.

VL - 91 SN - 0012-9658 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21141200&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 11 ER - TY - JOUR T1 - Genetic and environmental controls of microbial communities on leaf litter in streams . JF - Freshwater Biology Y1 - 2009 A1 - Marks,JC A1 - Haden,GA A1 - Harrop,BA A1 - Reese,EG A1 - Keams,JL A1 - Watwood,ME A1 - TG Whitham VL - 54 N1 - [Original String]:Marks JC, Haden GA, Harrop BA, Reese EG, Keams JL, Watwood ME, Whitham TG. 2009. Genetic and environmental controls of microbial communities on leaf litter in streams . Freshwater Biology 54:2616-2627. ER - TY - JOUR T1 - Genetic basis of aboveground productivity in two native Populus species and their hybrids. JF - Tree physiology Y1 - 2009 A1 - Lojewski,Nathan R A1 - Fischer,Dylan G A1 - JK Bailey A1 - Jennifer A Schweitzer A1 - Whitham,Thomas G A1 - Stephen C Hart KW - Ecosystem KW - Genotype KW - Hybridization, Genetic KW - Populus KW - Species Specificity KW - Utah AB -

Demonstration of genetic control over riparian tree productivity has major implications for responses of riparian systems to shifting environmental conditions and effects of genetics on ecosystems in general. We used field studies and common gardens, applying both molecular and quantitative techniques, to compare plot-level tree aboveground net primary productivity (ANPP(tree)) and individual tree growth rate constants in relation to plant genetic identity in two naturally occurring Populus tree species and their hybrids. In field comparisons of four cross types (Populus fremontii S. Wats., Populus angustifolia James, F(1) hybrids and backcross hybrids) across 11 natural stands, productivity was greatest for P. fremontii trees, followed by hybrids and lowest in P. angustifolia. A similar pattern was observed in four common gardens across a 290 m elevation and 100 km environmental gradient. Despite a doubling in productivity across the common gardens, the relative differences among the cross types remained constant. Using clonal replicates in a common garden, we found ANPP(tree) to be a heritable plant trait (i.e., broad-sense heritability), such that plant genetic factors explained between 38% and 82% of the variation in ANPP(tree). Furthermore, analysis of the genetic composition among individual tree genotypes using restriction fragment length polymorphism molecular markers showed that genetically similar trees also exhibited similar ANPP(tree). These findings indicate strong genetic contributions to natural variation in ANPP with important ecological implications.

VL - 29 SN - 0829-318X UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=19578030&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 9 ER - TY - JOUR T1 - Genetically based susceptibility to herbivory influences the ectomycorrhizal fungal communities of a foundation tree species. JF - The New phytologist Y1 - 2009 A1 - Sthultz,Christopher M A1 - Whitham,Thomas G A1 - Kennedy,Karla A1 - Deckert,Ron A1 - Gehring,Catherine A KW - Animals KW - DNA, Fungal KW - Ecosystem KW - Host-Pathogen Interactions KW - Models, Biological KW - Moths KW - Mycorrhizae KW - Pinus KW - Symbiosis AB -

Although recent research indicates that herbivores interact with plant-associated microbes in complex ways, few studies have examined these interactions using a community approach. For example, the impact of herbivory on the community structure of ectomycorrhizal fungi (EMF) is not well known. The influence of host plant genetics on EMF community composition is also poorly understood. We used a study system in which susceptibility to herbivory has a genetic basis and a 20-yr insect removal experiment to examine the influence of chronic herbivory and plant genetics on the EMF community structure of Pinus edulis. We compared EMF communities of herbivore resistant trees, herbivore susceptible trees and herbivore susceptible trees from which herbivores were experimentally removed at two dates 10 yr apart. In both years sampled, resistant and susceptible trees differed significantly in EMF community composition. After 10 yr and 20 yr of herbivore removal, the EMF communities of removal trees were similar to those of susceptible trees, but different from resistant trees. The EMF community composition was more strongly influenced by innate genetic differences in plant traits associated with resistance and susceptibility to herbivory than by indirect effects of herbivory on host plant relationships with ectomycorrhizal fungi.

VL - 184 SN - 0028-646X UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=19761493&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 3 ER - TY - JOUR T1 - A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences. JF - Ecology Y1 - 2009 A1 - Barbour,Robert C A1 - O'Reilly-Wapstra,Julianne M A1 - De Little,David W A1 - Jordan,Gregory J A1 - Steane,Dorothy A A1 - Humphreys,Jonathon R A1 - JK Bailey A1 - Whitham,Thomas G A1 - Potts,Bradley M KW - Animals KW - Australia KW - Biological Evolution KW - Demography KW - Ecosystem KW - Eucalyptus KW - Fungi KW - Genetic Variation KW - Insecta AB -

Knowledge of the manner in which genetic variation within a tree species affects associated communities and ecosystem processes across its entire range is important for understanding how geographic mosaics of genetic interactions might develop and support different communities. While numerous studies have investigated the community and ecosystem consequences of genetic variation at the hybrid cross type or genotype level within a species, none has investigated the community-level effects of intraspecific genetic variation across the geographic range of a widespread species. This is the scale at which geographic mosaics of coevolution are hypothesized to exist. Studies at this level are particularly important for foundation tree species, which typically support numerous microbial, fungal, plant, and animal communities. We studied genetic variation across eight geographical races of the forest tree Eucalyptus globulus representing its natural distribution across southeastern Australia. The study was conducted in a 15-year-old common garden trial based on families derived from single-tree open-pollinated seed collections from the wild. Neutral molecular genetic variation within E. globulus was also assessed and compared with genetic divergence in the phenotypic and community traits. Three major findings emerged. First, we found significant genetically based, hierarchical variation in associated communities corresponding to geographical races of E. globulus and families within races. Second, divergence in foliar communities at the racial level was associated with genetically based divergence in specific leaf morphological and chemical traits that have known defensive functions. Third, significant positive correlations between canopy community dissimilarity and both neutral molecular genetic and leaf quantitative genetic dissimilarity at the race level supported a genetic similarity rule. Our results argue that genetic variation within foundation tree species has the potential to be a significant driver of the geographical mosaics of variation typical of forest communities, which could have important ecological and evolutionary implications.

VL - 90 SN - 0012-9658 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=19694126&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 7 ER - TY - JOUR T1 - Genetic structure of a foundation species: scaling community phenotypes from the individual to the region. JF - Heredity Y1 - 2008 A1 - RK Bangert A1 - E V Lonsdorf A1 - Wimp,G M A1 - Shuster,S M A1 - Fischer,D A1 - Schweitzer,J A A1 - Allan,G J A1 - JK Bailey A1 - Whitham,T G KW - Animals KW - biodiversity KW - Ecosystem KW - Environment KW - Populus KW - Trees AB -

Understanding the local and regional patterns of species distributions has been a major goal of ecological and evolutionary research. The notion that these patterns can be understood through simple quantitative rules is attractive, but while numerous scaling laws exist (e.g., metabolic, fractals), we are aware of no studies that have placed individual traits and community structure together within a genetics based scaling framework. We document the potential for a genetic basis to the scaling of ecological communities, largely based upon our long-term studies of poplars (Populus spp.). The genetic structure and diversity of these foundation species affects riparian ecosystems and determines a much larger community of dependent organisms. Three examples illustrate these ideas. First, there is a strong genetic basis to phytochemistry and tree architecture (both above- and belowground), which can affect diverse organisms and ecosystem processes. Second, empirical studies in the wild show that the local patterns of genetics based community structure scale up to western North America. At multiple spatial scales the arthropod community phenotype is related to the genetic distance among plants that these arthropods depend upon for survival. Third, we suggest that the familiar species-area curve, in which species richness is a function of area, is also a function of genetic diversity. We find that arthropod species richness is closely correlated with the genetic marker diversity and trait variance suggesting a genetic component to these curves. Finally, we discuss how genetic variation can interact with environmental variation to affect community attributes across geographic scales along with conservation implications.

VL - 100 SN - 0018-067X UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=17047690&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 2 ER - TY - JOUR T1 - Genetic assembly rules and community phenotypes JF - Evolutionary Ecology Y1 - 2007 A1 - TG Whitham A1 - RK Bangert VL - 21 UR - http://www.bioone.org/servlet/linkout?suffix=bibr04&dbid=16&doi=10.2980%2F19-1-3402&key=10.1007%2Fs10682-006-9135-7 IS - 4 ER - TY - JOUR T1 - Genetic‐based plant resistance and susceptibility traits to herbivory influence needle and root litter nutrient dynamics JF - Journal of Ecology Y1 - 2007 A1 - Classen,AT A1 - Chapman,SK A1 - TG Whitham A1 - Hart,SC A1 - GW Koch AB - Summary 1 It is generally assumed that the same factors drive the decomposition of both litter and roots and that nutrient release from litter and roots is synchronized. However, few studies have explicitly tested these assumptions, and no studies have examined whether plant genetics (i.e. plant susceptibility to herbivory) could affect these relationships. 2 Here we examine the effects of herbivore susceptibility and resistance on needle and fine root litter decomposition of pi帽on pine, Pinus edulis . The study population consists of individual trees that are either susceptible or resistant to herbivory by the pi帽on needle scale, Matsucoccus acalyptus , or the stem-boring moth, Dioryctria albovittella . Genetic analyses and long-term experimental removals and additions of these insects to individual trees have identified trees that are naturally resistant or susceptible to M. acalyptus and D. albovittella . In addition, these herbivores increase litter chemical quality and alter soil microclimate, both of which mediate decomposition in ecosystems. 3 The effects of herbivore susceptibility and resistance on needle litter mass and phosphorus (P) loss, when significant, are largely mediated by herbivore-induced changes to microclimate. But the effects of herbivore susceptibility and resistance on root litter nitrogen (N) and P retention, and needle litter N retention, are largely governed by herbivore-induced changes to litter chemical quality. Whether a particular tree was resistant or susceptible to herbivores exerted a large influence on net nutrient release, but the direction of herbivore influence varied temporally. 4 The controls on decomposition vary between herbivore-susceptible and herbivore-resistant phenotypes. This suggests that understanding decomposition and nutrient retention in some ecosystems may require considering the effects of herbivores on above- and below-ground processes and how these effects may be governed by plant genetics. 5 Synthesis . Because so few studies have attempted to quantify genetic components of ecosystem processes, the integration of ecosystem ecology with population genetics has the potential to place ecosystem science within a genetic and evolutionary framework. Using field trials of known genetic composition, ecosystem scientists may use quantitative genetics techniques to explore ecosystem traits just as population geneticists have used these techniques to explore traditional traits such as resistance to insects. VL - 95 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2745.2007.01297.x/full IS - 6 ER -