TY - JOUR T1 - High temperature at lower elevation sites fails to promote acclimation or adaptation to heat stress during pollen germination. JF - Frontiers in Plant Science Y1 - 2018 A1 - Flores-Rentería, L. A1 - Whipple, A.V., A1 - Benally, G.J. A1 - Patterson, A.M. A1 - Canyon, B. A1 - Gehring, C.A. AB -
High temperatures associated with climate change are expected to be detrimental for aspects of plant reproduction, such as pollen viability. We hypothesized that (1) higher peak temperatures predicted with climate change would have a minimal effect on pollen viability, while high temperatures during pollen germination would negatively affect pollen viability, (2) high temperatures during pollen dispersal would facilitate acclimation to high temperatures during pollen germination, and (3) pollen from populations at sites with warmer average temperatures would be better adapted to high temperature peaks. We tested these hypotheses in Pinus edulis, a species with demonstrated sensitivity to climate change, using populations along an elevational gradient. We tested for acclimation to high temperatures by measuring pollen viability during dispersal and germination stages in pollen subjected to 30, 35, and 40°C in a factorial design. We also characterized pollen phenology and measured pollen heat tolerance using trees from nine sites along a 200 m elevational gradient that varied 4°C in temperature. We demonstrated that this gradient is biologically meaningful by evaluating variation in vegetation composition and P. edulis performance. Male reproduction was negatively affected by high temperatures, with stronger effects during pollen germination than pollen dispersal. Populations along the elevational gradient varied in pollen phenology, vegetation composition, plant water stress, nutrient availability, and plant growth. In contrast to our hypothesis, pollen viability was highest in pinyons from mid-elevation sites rather than from lower elevation sites. We found no evidence of acclimation or adaptation of pollen to high temperatures. Maximal plant performance as measured by growth did not occur at the same elevation as maximal pollen viability. These results indicate that periods of high temperature negatively affected sexual reproduction, such that even high pollen production may not result in successful fertilization due to low germination. Acquired thermotolerance might not limit these impacts, but pinyon could avoid heat stress by phenological adjustment of pollen development. Higher pollen viability at the core of the distribution could be explained by an optimal combination of biotic and abiotic environmental factors. The disconnect between measures of growth and pollen production suggests that vigor metrics may not accurately estimate reproduction.
VL - 9 UR - https://www.frontiersin.org/articles/10.3389/fpls.2018.00536/full ER - TY - JOUR T1 - The role of hybridization during ecological divergence of southwestern white pine (Pinus strobiformis) and limber pine (P. flexilis) JF - Molecular Ecology Y1 - 2018 A1 - Mitra Menon A1 - Justin C. Bagley A1 - Christopher J. Friedline A1 - Amy V. Whipple A1 - Anna W. Schoettle A1 - Alejandro Leal-Saenz A1 - Christian Wehenkel A1 - Francisco Molina-Freaner A1 - Lluvia Flores-Renterıa A1 - M. Socorro Gonzalez-Elizondo A1 - Richard A. Sniezko A1 - Samuel A. Cushman A1 - Kristen M. Waring A1 - Andrew J. Eckert KW - conifers KW - ecological speciation KW - extrinsic barriers KW - hybrid zone KW - introgression KW - population genomics AB -Interactions between extrinsic factors, such as disruptive selection and intrinsic factors,
such as genetic incompatibilities among loci, often contribute to the maintenance
of species boundaries. The relative roles of these factors in the establishment
of reproductive isolation can be examined using species pairs characterized by gene
flow throughout their divergence history. We investigated the process of speciation
and the maintenance of species boundaries between Pinus strobiformis and Pinus
flexilis. Utilizing ecological niche modelling, demographic modelling and genomic
cline analyses, we illustrated a divergence history with continuous gene flow. Our
results supported an abundance of advanced generation hybrids and a lack of loci
exhibiting steep transition in allele frequency across the hybrid zone. Additionally,
we found evidence for climate-associated variation in the hybrid index and niche
divergence between parental species and the hybrid zone. These results are consistent
with extrinsic factors, such as climate, being an important isolating mechanism.
A build-up of intrinsic incompatibilities and of coadapted gene complexes is also
apparent, although these appear to be in the earliest stages of development. This
supports previous work in coniferous species demonstrating the importance of extrinsic factors in facilitating speciation. Overall, our findings lend support to the
hypothesis that varying strength and direction of selection pressures across the long
lifespans of conifers, in combination with their other life history traits, delays the
evolution of strong intrinsic incompatibilities.
Southwestern white pine (Pinus strobiformis; SWWP) is a conifer species that occurs at mid to high elevations in
the mountains of Arizona, New Mexico, and northern Mexico. A key component of mixed conifer forests in the
region, SWWP is an important species for wildlife and biodiversity. The dual threats of the non-native fungal
pathogen that causes white pine blister rust (WPBR) and a warmer, drier projected future climate have created
an uncertain future for SWWP. In this study, we used a novel multi-scale optimization approach including an
ensemble of four species distribution modeling methods to explore the relationship between SWWP occurrence
and environmental variables based on climate, soil, and topography. Spatial projections of these models reflecting
the present climate provide an improved range map for this species that can be used to guide field data
collection and monitoring of WPBR outbreaks. Future projections based on two emissions scenarios and an
ensemble of 15 general circulation models project a large range shift and range contraction by 2080. Changes in
the future distribution were particularly extreme under the higher emissions scenario, with a more than 1000 km
northerly shift in the mean latitude and 500m increase in the mean elevation of the species’ suitable habitat.
This coincided with a range contraction of over 60% and a significant increase in habitat fragmentation. The
ability of SWWP to realize its projected future range will depend on colonization at the leading edge of the range
shift, including dispersal dynamics, resistance to WPBR, competition with other species, and genetic adaptations
to local climate. Our results provide information that can be used to guide monitoring efforts and inform conservation
planning for this keystone species.
Although hybridization in plants has been recognized as an important pathway in plant speciation, it may also affect the ecology and evolution of associated communities. Cottonwood species (Populus angustifolia and P. fremontii) and their naturally occurring hybrids are known to support different plant, animal, and microbial communities, but no studies have examined community structure within the context of phylogenetic history. Using a community composed of 199 arthropod species, we tested for differences in arthropod phylogenetic patterns within and among hybrid and parental tree types in a common garden. Three major patterns emerged. (1) Phylogenetic diversity (PD) was significantly different between arthropod communities on hybrids and Fremont cottonwood when pooled by tree type. (2) Mean phylogenetic distance (MPD) and net relatedness index (NRI) indicated that communities on hybrid trees were significantly more phylogenetically overdispersed than communities on either parental tree type. (3) Community distance (Dpw) indicated that communities on hybrids were significantly different than parental species. Our results show that arthropod communities on parental and hybrid cottonwoods exhibit significantly different patterns of phylogenetic structure. This suggests that arthropod community assembly is driven, in part, by plant-arthropod interactions at the level of cottonwood tree type. We discuss potential hypotheses to explain the effect of plant genetic dissimilarity on arthropod phylogenetic community structure, including the role of competition and environmental filtering. Our findings suggest that cottonwood species and their hybrids function as evolutionarily significant units (ESUs) that affect the assembly and composition of associated arthropod communities and deserve high priority for conservation.
VL - 7 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=28808554&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 15 ER - TY - JOUR T1 - Arthropod communities on hybrid and parental cottonwoods are phylogenetically structured by tree type: Implications for conservation of biodiversity in plant hybrid zones. JF - Ecology and Evolution Y1 - 2017 A1 - Jarvis, K.J. A1 - Allan, G.J. A1 - Craig, A. J. A1 - Beresic-Perrins, R. K.. A1 - G. Wimp A1 - Gehring, C.A. A1 - T. G. Whitham KW - arthropod phylogenetics KW - common garden KW - community genetics KW - community phylogenetics KW - foundation species KW - hybridization AB -Although hybridization in plants has been recognized as an important pathway in plant speciation, it may also affect the ecology and evolution of associated communities. Cottonwood species (Populus angustifolia and P. fremontii) and their naturally occurring hybrids are known to support different plant, animal, and microbial communities, but no studies have examined community structure within the context of phylogenetic history. Using a community composed of 199 arthropod species, we tested for differences in arthropod phylogenetic patterns within and among hybrid and parental tree types in a common garden. Three major patterns emerged. (1) Phylogenetic diversity (PD) was significantly different between arthropod communities on hybrids and Fremont cottonwood when pooled by tree type. (2) Mean phylogenetic distance (MPD) and net relatedness index (NRI) indicated that communities on hybrid trees were significantly more phylogenetically overdispersed than communities on either parental tree type. (3) Community distance (D pw) indicated that communities on hybrids were significantly different than parental species. Our results show that arthropod communities on parental and hybrid cottonwoods exhibit significantly different patterns of phylogenetic structure. This suggests that arthropod community assembly is driven, in part, by plant–arthropod interactions at the level of cottonwood tree type. We discuss potential hypotheses to explain the effect of plant genetic dissimilarity on arthropod phylogenetic community structure, including the role of competition and environmental filtering. Our findings suggest that cottonwood species and their hybrids function as evolutionarily significant units (ESUs) that affect the assembly and composition of associated arthropod communities and deserve high priority for conservation.
VL - 7 UR - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5551273/ IS - 15 ER - TY - CONF T1 - Blending Ecology and Evolution using Emerging Technologies to Determine Species Distributions with a Non-native Pathogen in a Changing Climate. T2 - Forest Regeneration in Changing Climates Y1 - 2017 A1 - K Waring A1 - Cushman,S A1 - Eckert,A A1 - L Flores-Renteria A1 - R Sniezko A1 - Still,S A1 - Wehenkel,C A1 - AV Whipple A1 - Wing,M A1 - Boes,E A1 - Bucholz,E A1 - Burnett,J A1 - Castilla,A A1 - DaBell,J A1 - Friedline,C A1 - Garms,C A1 - Heck,E A1 - Johnson,J A1 - Leal-Saenz,A A1 - McTeague,B A1 - Menon,M A1 - Moler,E JF - Forest Regeneration in Changing Climates T3 - Forest Regeneration in Changing Climates CY - Corvallis, OR N1 - [Original String]:Waring K., Cushman, S., Eckert, A., Flores Renteria, L., Sniezko, R., Still, S., Wehenkel, C., Whipple, A., Wing, M., Boes, E., Bucholz, E., Burnett, J., Castilla, A., DaBell, J., Friedline, C., Garms, C., Heck, E., Johnson, J., Leal Saenz, A., McTeague, B., Menon M., and Moler E. 2017. Blending Ecology and Evolution using Emerging Technologies to Determine Species Distributions with a Non-native Pathogen in a Changing Climate. Forest Regeneration in Changing Climates, July 11-13, 2017, Corvallis, OR. ER - TY - CONF T1 - A holistic approach to genetic conservation in Pinus strobiformis. T2 - International Scientific Conference on Genetics of Populations Progress and Perspectives commemorating the 80th birthday of Academician Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu P Biological Sta Y1 - 2017 A1 - K Waring A1 - Cushman,S A1 - Eckert,A A1 - L Flores-Renteria A1 - R Sniezko A1 - Still,C A1 - Wehenkel,C A1 - AV Whipple A1 - Wing,M A1 - Yury,P AB -Waring, K, Cushman, S, Eckert A, Flores Renteria, L, Sniezko, R, Still,C, Wehenkel, C, Whipple, A, and Wing, M. 2017. A holistic approach to genetic conservation in Pinus strobiformis. International Scientific Conference on Genetics of Populations: Progress and Perspectives, commemorating the 80th birthday of Academician Yury P. Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu. P. Altukhov, 17-21 April 2017, Zvenogorod Biological Station, Russia.
JF - International Scientific Conference on Genetics of Populations Progress and Perspectives commemorating the 80th birthday of Academician Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu P Biological Sta T3 - International Scientific Conference on Genetics of Populations Progress and Perspectives commemorating the 80th birthday of Academician Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu P Biological Sta CY - Zvenogorod Biological Station, Russia VL - 2017 N1 - [Original String]:Waring, K, Cushman, S, Eckert A, Flores Renteria, L, Sniezko, R, Still, C, Wehenkel, C, Whipple, A, and Wing, M. 2017. A holistic approach to genetic conservation in Pinus strobiformis. International Scientific Conference on Genetics of Populations: Progress and Perspectives, commemorating the 80th birthday of Academician Yury P. Altukhov and dedicated to the 45th Anniversary of the Laboratory of Population Genetics named after Yu. P. Altukhov, 17-21 April 2017, Zvenogorod Biological Station, Russia. ER - TY - CHAP T1 - IN PRESS: Using the Southwest Experimental Garden Array to enhance riparian restoration in response to global change: Identifying and deploying genotypes and populations for current and future environments. T2 - In Riparian research and management: Past, present, future. Y1 - 2017 A1 - Whitham, T.G. A1 - C.A. Gehring A1 - H.M. Bothwell A1 - H.F. Cooper A1 - J.B. Hull A1 - G.J. Allan A1 - K.C. Grady A1 - L. Markovchick A1 - S.M. Shuster A1 - J. Parker A1 - A.E. Cadmus A1 - D.H. Ikeda A1 - R.K. Bangert JF - In Riparian research and management: Past, present, future. PB - Gen. Tech. Rep. RMRS-GTR-inpress Fort Collins U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. CY - Fort Collins, CO, USA VL - 2 ER - TY - JOUR T1 - B.A. Adams, and Plant genotype influences aquatic-terrestrial ecosystem linkages through timing and composition of insect emergence. JF - ECOSPHERE e01331 101002ecs21331 DOI 101002ecs21331 Y1 - 2016 A1 - Compson,ZG A1 - Hungate,TG A1 - Whitham,N A1 - Meneses,PE A1 - Busby,T A1 - Wojtowicz,AC A1 - Ford,KJ A1 - Marks,JC VL - 7 IS - 5 N1 - [Original String]:Compson, Z.G., B.A. Hungate, T.G. Whitham, N. Meneses, P.E. Busby, T. Wojtowicz, A.C. Ford, K.J. Adams, and Marks, J.C. 2016. Plant genotype influences aquatic-terrestrial ecosystem linkages through timing and composition of insect emergence. ECOSPHERE 7(5) : e01331. 10.1002/ecs2.1331. DOI: 10.1002/ecs2.1331 ER - TY - JOUR T1 - Chapter Five – Tradeoffs and Compatibilities Among Ecosystem Services : Biological, Physical and Economic Drivers of Multifunctionality JF - Advances in Ecological Research Y1 - 2016 A1 - Butterfield,BJ A1 - Camhi,AL A1 - Rubin,RL A1 - Schwalm,CR AB - Balancing the joint production of multiple ecosystem services, also referred to as the 鈥榤ultifunctionality鈥 of an ecosystem or landscape, requires understanding of the ecological processes that produce and economic processes that evaluate those services. Here, we review the ecological tradeoffs and compatibilities among ecosystem processes that influence ecosystem multifunctionality with respect to ecosystem services, including variation in functional strategies, constraints on community assembly and direct effects of the abiotic environment. We then review how different valuation methods may alter the magnitude of tradeoffs and compatibilities in monetary terms. Among communities, functional diversity increases ecosystem multifunctionality, but community-average trait values are emerging as important drivers of ecosystem services with greater potential to produce tradeoffs when compared to functional diversity. However, research that links organismal functional strategies to community assembly rules in real, heterogeneous landscapes demonstrate that predictable tradeoffs among species do not consistently scale up to the community level, necessitating further research on trait-based community assembly in order to develop general predictive models of biotic effects on ecosystem multifunctionality. Abiotic factors are frequently incorporated into mapping assessments of multifunctionality, but the emergent tradeoffs and compatibilities in ecosystem services driven by those factors are rarely assessed, despite a number of studies that have demonstrated their clear importance in ecosystem multifunctionality. Finally, while a variety of valuation methods are used to quantify the joint production of ecosystem services, only provisioning services are typically directly valued and assumed to have fixed correlations with other ecosystem services that can lead to inaccurate valuation, and potentially inappropriate prioritisation, of multiple ecosystem services. VL - 54 UR - http://www.sciencedirect.com/science/article/pii/S0065250415000264 ER - TY - CONF T1 - Collaborative research for sustainable management of southwestern white pine. T2 - Society of American Foresters National Convention Y1 - 2016 A1 - K Waring A1 - Cushman,S A1 - Eckert,A A1 - L Flores-Renteria A1 - Lintz,H A1 - R Sniezko A1 - Still,C A1 - Wehenkel,C A1 - AV Whipple A1 - Wing,M AB -
Waring, K., Cushman, S., Eckert, A., Flores-Renteria, L., Lintz, H.,Sniezko, R., Still, C., Wehenkel, C., Whipple, A., and Wing, M. 2016. Collaborative research for sustainable management of southwestern white pine. Society of American Foresters National Convention, November 2-5, 2016, Madison, WI.
We synthesize insights from current understanding of drought impacts at stand-to-biogeographic scales, including management options, and we identify challenges to be addressed with new research. Large stand-level shifts underway in western forests already are showing the importance of interactions involving drought, insects, and fire. Diebacks, changes in composition and structure, and shifting range limits are widely observed. In the eastern US, the effects of increasing drought are becoming better understood at the level of individual trees, but this knowledge cannot yet be confidently translated to predictions of changing structure and diversity of forest stands. While eastern forests have not experienced the types of changes seen in western forests in recent decades, they too are vulnerable to drought and could experience significant changes with increased severity, frequency, or duration in drought. Throughout the continental United States, the combination of projected large climate-induced shifts in suitable habitat from modeling studies and limited potential for the rapid migration of tree populations suggests that changing tree and forest biogeography could substantially lag habitat shifts already underway. Forest management practices can partially ameliorate drought impacts through reductions in stand density, selection of drought-tolerant species and genotypes, artificial regeneration, and the development of multistructured stands. However, silvicultural treatments also could exacerbate drought impacts unless implemented with careful attention to site and stand characteristics. Gaps in our understanding should motivate new research on the effects of interactions involving climate and other species at the stand scale and how interactions and multiple responses are represented in models. This assessment indicates that, without a stronger empirical basis for drought impacts at the stand scale, more complex models may provide limited guidance.
VL - 22 SN - 1354-1013 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=26898361&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 7 ER - TY - JOUR T1 - Phylogenetic organization of bacterial activity. JF - The ISME journal Y1 - 2016 A1 - Ember M Morrissey A1 - Mau,Rebecca L A1 - Egbert Schwartz A1 - Caporaso,J Gregory A1 - P Dijkstra A1 - van Gestel,Natasja A1 - BJ Koch A1 - Liu,Cindy M A1 - Hayer,Michaela A1 - McHugh,Theresa A A1 - Jane C Marks A1 - Lance B Price A1 - Hungate,Bruce A KW - Bacteria KW - Biological Evolution KW - Carbon Isotopes KW - Ecology KW - Ecosystem KW - Oxygen Isotopes KW - Phenotype KW - Phylogeny AB -Phylogeny is an ecologically meaningful way to classify plants and animals, as closely related taxa frequently have similar ecological characteristics, functional traits and effects on ecosystem processes. For bacteria, however, phylogeny has been argued to be an unreliable indicator of an organism's ecology owing to evolutionary processes more common to microbes such as gene loss and lateral gene transfer, as well as convergent evolution. Here we use advanced stable isotope probing with (13)C and (18)O to show that evolutionary history has ecological significance for in situ bacterial activity. Phylogenetic organization in the activity of bacteria sets the stage for characterizing the functional attributes of bacterial taxonomic groups. Connecting identity with function in this way will allow scientists to begin building a mechanistic understanding of how bacterial community composition regulates critical ecosystem functions.
VL - 10 SN - 1751-7362 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=26943624&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 9 ER - TY - JOUR T1 - Prestoration: Using species in restoration that will persist now and into the future. JF - Restoration Ecology Y1 - 2016 A1 - Butterfield,BJ A1 - Copeland,SM A1 - Munson,SM A1 - Roybal,CM A1 - Wood,TE AB -Climate change presents newchallenges for selecting species for restoration. If migration fails to keep pace with climate change, as models predict, the most suitable sources for restoration may not occur locally at all. To address this issue, we propose a strategy of “prestoration”: utilizing species in restoration for which a site represents suitable habitat now and into the future. Using the Colorado Plateau, United States, as a case study, we assess the ability of grass species currently used regionally in restoration to persist into the future using projections of ecological niche models (or climate envelope models) across a suite of climate change scenarios. We then present a technique for identifying new species that best compensate for future losses of suitable habitat by current target species. We found that the current suite of species, selected by a group of experts, is predicted to perform reasonably well in the short term, but that losses of prestorable habitat by mid-century would approach 40%. Using an algorithm to identify additional species, we found that fewer than 10 species could compensate for nearly all of the losses incurred by the current target species. This case study highlights the utility of integrating ecological niche modeling and future climate forecasts to predict the utility of species in restoring under climate change across a wide range of spatial and temporal scales.
N1 - [Original String]:Butterfield, B.J., Copeland, S.M., Munson, S.M., Roybal, C.M. and Wood, T.E. (In press). Prestoration: Using species in restoration that will persist now and into the future. Restoration Ecology. ER - TY - JOUR T1 - A robust method to determine historical annual cone production among slow-growing conifers. JF - Canadian Journal of Forest Research Y1 - 2016 A1 - Redmond,M A1 - Weisberg,P A1 - Cobb,NS A1 - CA Gehring A1 - AV Whipple A1 - TG Whitham VL - 398 N1 - [Original String]:Redmond, M., Weisberg, P., Cobb, N. S., Gehring, C. A., Whipple, A. V., & Whitham, T. G. (2016). A robust method to determine historical annual cone production among slow-growing conifers. Canadian Journal of Forest Research, 398, 1-6. ER - TY - CONF T1 - Sustaining southwestern white pine by combining experimental work and genomic tools. Y1 - 2016 A1 - Castilla,AR A1 - R Sniezko A1 - K Waring A1 - Cushman,S A1 - Eckert,A.J A1 - Flores,L A1 - Still,C A1 - Wehenkel,C A1 - Whipple,A A1 - Wing,M A1 - TE Kolb A1 - Goodrich,B.A. ER - TY - CONF T1 - Taxon-specific microbial activities explain soil carbon cycling dynamics. T2 - Ecological Society of America Y1 - 2016 A1 - Morrissey,EM A1 - RL Mau A1 - Schwartz,E A1 - Caporaso,JG A1 - P Dijkstra A1 - McHugh,T A1 - Marks,JC A1 - Price,LB A1 - Liu,CM A1 - Hungate,BA AB -Morrissey, E.M., Mau, R.L., Schwartz, E., Caporaso, J.G., Dijkstra, P.,McHugh, T., Marks, J.C., Price, L.B., Liu, C.M. and Hungate, B.A. (2016). Taxon-specific microbial activities explain soil carbon cycling dynamics. ESA August 7-12, Fort Lauderdale.
JF - Ecological Society of America T3 - Ecological Society of America Annual Meeting PB - ESA CY - Fort Lauderdale, Florida, USA N1 - [Original String]:Morrissey, E.M., Mau, R.L., Schwartz, E., Caporaso, J.G., Dijkstra, P., McHugh, T., Marks, J.C., Price, L.B., Liu, C.M. and Hungate, B.A. (2016). Taxon-specific microbial activities explain soil carbon cycling dynamics. ESA August 7-12, Fort Lauderdale. ER - TY - JOUR T1 - Process Modeling for Soil Moisture Using Sensor Network Data . JF - Statistical Methodology (Special issue on modern statistical methods in ecology) Y1 - 2014 A1 - Ghosh,S A1 - Bell,DM A1 - Clark,JS A1 - Gelfand,AE A1 - Flikkema,P VL - 12 N1 - [Original String]:Ghosh S, Bell DM, Clark JS, Gelfand AE, and Flikkema P. 2014. Process Modeling for Soil Moisture Using Sensor Network Data . Statistical Methodology (Special issue on modern statistical methods in ecology)12: 99-112. ER - TY - JOUR T1 - Leaf litter quality affects aquatic insect emergence: contrasting patterns from two foundation trees. JF - Oecologia Y1 - 2013 A1 - Compson,Zacchaeus G A1 - Adams,Kenneth J A1 - Edwards,Joeseph A A1 - Maestas,Jesse M A1 - Whitham,Thomas G A1 - Jane C Marks KW - Animals KW - arizona KW - Biota KW - Food Chain KW - Insecta KW - Plant Leaves KW - Populus KW - Rivers KW - Species Specificity AB -Reciprocal subsidies between rivers and terrestrial habitats are common where terrestrial leaf litter provides energy to aquatic invertebrates while emerging aquatic insects provide energy to terrestrial predators (e.g., birds, lizards, spiders). We examined how aquatic insect emergence changed seasonally with litter from two foundation riparian trees, whose litter often dominates riparian streams of the southwestern United States: Fremont (Populus fremontii) and narrowleaf (Populus angustifolia) cottonwood. P. fremontii litter is fast-decomposing and lower in defensive phytochemicals (i.e., condensed tannins, lignin) relative to P. angustifolia. We experimentally manipulated leaf litter from these two species by placing them in leaf enclosures with emergence traps attached in order to determine how leaf type influenced insect emergence. Contrary to our initial predictions, we found that packs with slow-decomposing leaves tended to support more emergent insects relative to packs with fast-decomposing leaves. Three findings emerged. Firstly, abundance (number of emerging insects m(-2) day(-1)) was 25% higher on narrowleaf compared to Fremont leaves for the spring but did not differ in the fall, demonstrating that leaf quality from two dominant trees of the same genus yielded different emergence patterns and that these patterns changed seasonally. Secondly, functional feeding groups of emerging insects differed between treatments and seasons. Specifically, in the spring collector-gatherer abundance and biomass were higher on narrowleaf leaves, whereas collector-filterer abundance and biomass were higher on Fremont leaves. Shredder abundance and biomass were higher on narrowleaf leaves in the fall. Thirdly, diversity (Shannon's H') was higher on Fremont leaves in the spring, but no differences were found in the fall, showing that fast-decomposing leaves can support a more diverse, complex emergent insect assemblage during certain times of the year. Collectively, these results challenge the notion that leaf quality is a simple function of decomposition, suggesting instead that aquatic insects benefit differentially from different leaf types, such that some use slow-decomposing litter for habitat and its temporal longevity and others utilize fast-decomposing litter with more immediate nutrient release.
VL - 173 SN - 0029-8549 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=23532583&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 2 ER - TY - JOUR T1 - The relative influences of host plant genotype and yearly abiotic variability in determining herbivore abundance. JF - Oecologia Y1 - 2012 A1 - Evans,Luke M A1 - James S Clark A1 - Whipple,Amy V A1 - Whitham,Thomas G KW - Animals KW - Bayes Theorem KW - Genotype KW - Herbivory KW - Mites KW - Population Density KW - Population Dynamics KW - Populus AB -Both plant genotype and yearly abiotic variation affect herbivore population sizes, but long-term data have rarely been used to contrast the relative contributions of each. Using a hierarchical Bayesian model, we directly compare effects of these two factors on the population size of a common herbivore, Aceria parapopuli, on Populus angustifolia × fremontii F(1) hybrid trees growing in a common garden across 8 years. Several patterns emerged. First, the Bayesian posterior estimates of tree genotype effects on mite gall number ranged from 0.0043 to 229 on a linear scale. Second, year effect sizes across 8 years of study ranged from 0.133 to 1.895. Third, in comparing the magnitudes of genotypic versus yearly variation, we found that genotypic variation was over 130 times greater than variation among years. Fourth, precipitation in the previous year negatively affected gall abundances, but was minimal compared to tree genotype effects. These findings demonstrate the relative importance of tree genotypic variation in determining herbivore population size. However, given the demonstrated sensitivity of cottonwoods to drought, the loss of individual tree genotypes from an altered climate would have catastrophic impacts on mites that are dependent upon these genotypes for their survival.
VL - 168 SN - 0029-8549 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21918874&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 2 ER - TY - JOUR T1 - A genetic basis for the manipulation of sink-source relationships by the galling aphid Pemphigus batae. JF - Oecologia Y1 - 2011 A1 - Compson,Zacchaeus G A1 - Larson,Katherine C A1 - Zinkgraf,Matthew S A1 - Whitham,Thomas G KW - Animals KW - Aphids KW - Carbon Radioisotopes KW - Ecosystem KW - Feeding Behavior KW - Host-Parasite Interactions KW - Phloem KW - Plant Leaves KW - Plant Shoots KW - Populus AB -We examined how the galling aphid Pemphigus batae manipulates resource translocation patterns of resistant and susceptible narrowleaf cottonwood Populus angustifolia. Using carbon-14 ((14)C)-labeling experiments in common garden trials, five patterns emerged. First, although aphid galls on resistant and susceptible genotypes did not differ in their capacity to intercept assimilates exported from the leaf they occupied, aphids sequestered 5.8-fold more assimilates from surrounding leaves on susceptible tree genotypes compared to resistant genotypes. Second, gall sinks on the same side of a shoot as a labeled leaf were 3.4-fold stronger than gall sinks on the opposite side of a shoot, which agrees with patterns of vascular connections among leaves of the same shoot (orthostichy). Third, plant genetic-based traits accounted for 26% of the variation in sink strength of gall sinks and 41% of the variation in sink strength of a plant's own bud sinks. Fourth, tree susceptibility to aphid gall formation accounted for 63% of the variation in (14)C import, suggesting strong genetic control of sink-source relationships. Fifth, competition between two galls was observed on a susceptible but not a resistant tree. On the susceptible tree distal aphids intercepted 1.5-fold more (14)C from the occupied leaf than did basal aphids, but basal aphids compensated for the presence of a distal competitor by almost doubling import to the gall from surrounding leaves. These findings and others, aimed at identifying candidate genes for resistance, argue the importance of including plant genetics in future studies of the manipulation of translocation patterns by phytophageous insects.
VL - 167 SN - 0029-8549 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21667296&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 3 ER - TY - JOUR T1 - Inferential ecosystem models, from network data to prediction. JF - Ecological applications : a publication of the Ecological Society of America Y1 - 2011 A1 - James S Clark A1 - Agarwal,Pankaj A1 - Bell,David M A1 - Flikkema,Paul G A1 - Gelfand,Alan A1 - Nguyen,Xuanlong A1 - Ward,Eric A1 - Yang,Jun KW - Bayes Theorem KW - Data Interpretation, Statistical KW - Ecology KW - Ecosystem KW - Forecasting KW - Models, Biological KW - Models, Statistical KW - Plant Transpiration KW - Plants KW - Time Factors AB -Recent developments suggest that predictive modeling could begin to play a larger role not only for data analysis, but also for data collection. We address the example of efficient wireless sensor networks, where inferential ecosystem models can be used to weigh the value of an observation against the cost of data collection. Transmission costs make observations "expensive"; networks will typically be deployed in remote locations without access to infrastructure (e.g., power). The capacity to sample intensively makes sensor networks valuable, but high-frequency data are informative only at specific times and locations. Sampling intervals will range from meters and seconds to landscapes and years, depending on the process, the current states of the system, the uncertainty about those states, and the perceived potential for rapid change. Given that intensive sampling is sometimes critical, but more often wasteful, how do we develop tools to control the measurement and transmission processes? We address the potential of data collection controlled and/or supplemented by inferential ecosystem models. In a given model, the value of an observation can be evaluated in terms of its contribution to estimates of state variables and important parameters. There will be more than one model applied to network data that will include as state variables water, carbon, energy balance, biogeochemistry, tree ecophysiology, and forest demographic processes. The value of an observation will depend on the application. Inference is needed to weigh the contributions against transmission cost. Network control must be dynamic and driven by models capable of learning about both the environment and the network. We discuss application of Bayesian inference to model data from a developing sensor network as a basis for controlling the measurement and transmission processes. Our examples involve soil moisture and sap flux, but we discuss broader application of the approach, including its implications for network design.
VL - 21 SN - 1051-0761 UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21830699&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 5 ER - TY - JOUR T1 - Phenotypic variation in nurse traits and community feedbacks define an alpine community. JF - Ecology letters Y1 - 2011 A1 - Michalet,Richard A1 - Xiao,Sa A1 - Touzard,Blaise A1 - David S Smith A1 - Cavieres,Lohengrin A A1 - Callaway,Ragan M A1 - Whitham,Thomas G KW - arizona KW - Ecosystem KW - Genotype KW - Geum KW - Models, Biological KW - Phenotype KW - Plant Leaves KW - Plant Roots KW - Plant Stems KW - Population Dynamics KW - Selection, Genetic AB -Much is known about facilitation, but virtually nothing about the underlying genetic and evolutionary consequences of this important interaction. We assessed the potential of phenotypic differences in facilitative effects of a foundation species to determine the composition of an Alpine community in Arizona. Two phenotypes of Geum rossii occur along a gradient of disturbance, with 'tight' competitive cushions in stable conditions and 'loose' facilitative cushions in disturbed conditions. A common-garden study suggested that field-based traits may have a genetic basis. Field experiments showed that the reproductive fitness of G. rossii cushions decreased with increasing facilitation. Finally, using a dual-lattice model we showed that including the cost and benefit of facilitation may contribute to the co-occurrence of genotypes with contrasting facilitative effects. Our results indicate that changes in community composition due to phenotypic differences in facilitative effects of a foundation species may in turn affect selective pressures on the foundation species.
VL - 14 SN - 1461-023X UR - http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&DbFrom=pubmed&Cmd=Link&LinkName=pubmed_pubmed&LinkReadableName=Related%20Articles&IdsFromResult=21366815&ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumhttp://www.ncbi. IS - 5 ER - TY - CONF T1 - From Data Reverence to Data Relevance: Model-Mediated Wireless Sensing of the Physical Environment T2 - ICCS 2007, 7th International Conference Y1 - 2007 A1 - PG Flikkema A1 - Agarwal,PK A1 - Clark,JS A1 - Ellis,C A1 - Gelfand,A ED - Albada,G ED - Dongarra,J ED - Sloot,P AB -Summary: Wireless sensor networks can be viewed as the integration of three subsystems: a low-impact in situ data acquisition and collection system, a system for inference of process models from observed data and a priori information, and a system that controls the observation and collection. Each of these systems is connected by feedforward and feedback signals from the others; moreover, each subsystem is formed from behavioral components that are distributed among the sensors and out-of-network computational resources. Crucially, the overall performance of the system is constrained by the costs of energy, time, and computational complexity. We are addressing these design issues in the context of monitoring forest environments with the objective of inferring ecosystem process models. We describe here our framework of treating data and models jointly, and its application to soil moisture processes.
JF - ICCS 2007, 7th International Conference T3 - ICCS 2007, 7th International Conference PB - Springer Berlin/Heidelberg CY - Beijing, China VL - 4487 UR - http://link.springer.com/10.1007/978-3-540-72584-8_130 ER - TY - JOUR T1 - Genetic‐based plant resistance and susceptibility traits to herbivory influence needle and root litter nutrient dynamics JF - Journal of Ecology Y1 - 2007 A1 - Classen,AT A1 - Chapman,SK A1 - TG Whitham A1 - Hart,SC A1 - GW Koch AB - Summary 1 It is generally assumed that the same factors drive the decomposition of both litter and roots and that nutrient release from litter and roots is synchronized. However, few studies have explicitly tested these assumptions, and no studies have examined whether plant genetics (i.e. plant susceptibility to herbivory) could affect these relationships. 2 Here we examine the effects of herbivore susceptibility and resistance on needle and fine root litter decomposition of pi帽on pine, Pinus edulis . The study population consists of individual trees that are either susceptible or resistant to herbivory by the pi帽on needle scale, Matsucoccus acalyptus , or the stem-boring moth, Dioryctria albovittella . Genetic analyses and long-term experimental removals and additions of these insects to individual trees have identified trees that are naturally resistant or susceptible to M. acalyptus and D. albovittella . In addition, these herbivores increase litter chemical quality and alter soil microclimate, both of which mediate decomposition in ecosystems. 3 The effects of herbivore susceptibility and resistance on needle litter mass and phosphorus (P) loss, when significant, are largely mediated by herbivore-induced changes to microclimate. But the effects of herbivore susceptibility and resistance on root litter nitrogen (N) and P retention, and needle litter N retention, are largely governed by herbivore-induced changes to litter chemical quality. Whether a particular tree was resistant or susceptible to herbivores exerted a large influence on net nutrient release, but the direction of herbivore influence varied temporally. 4 The controls on decomposition vary between herbivore-susceptible and herbivore-resistant phenotypes. This suggests that understanding decomposition and nutrient retention in some ecosystems may require considering the effects of herbivores on above- and below-ground processes and how these effects may be governed by plant genetics. 5 Synthesis . Because so few studies have attempted to quantify genetic components of ecosystem processes, the integration of ecosystem ecology with population genetics has the potential to place ecosystem science within a genetic and evolutionary framework. Using field trials of known genetic composition, ecosystem scientists may use quantitative genetics techniques to explore ecosystem traits just as population geneticists have used these techniques to explore traditional traits such as resistance to insects. VL - 95 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2745.2007.01297.x/full IS - 6 ER - TY - CHAP T1 - Host plants mediate ant-aphid mutualisms and their effects on community structure and diversity T2 - Ecological communities: plant mediation in indirect interaction webs. Y1 - 2007 A1 - Wimp,GM A1 - TG Whitham ED - Ohgushi,T ED - Craig,TP ED - Price,PW JF - Ecological communities: plant mediation in indirect interaction webs. PB - Cambridge University Press CY - New York, NY, USA ER - TY - CONF T1 - Model-Driven Dynamic Control of Embedded Wireless Sensor Networks T2 - Computational Science - ICCS 2006, Lecture Notes in Computer Science, 6th International Conference Y1 - 2006 A1 - PG Flikkema A1 - Agarwal,PK A1 - Clark,JS A1 - Ellis,C A1 - Gelfand,A ED - Alexandrov,V ED - van Albada,G ED - Sloot,P ED - Dongarra,J AB -Next-generation wireless sensor networks may revolutionize understanding of environmental change by assimilating heterogeneous data, assessing the relative value and costs of data collection, and sche
JF - Computational Science - ICCS 2006, Lecture Notes in Computer Science, 6th International Conference T3 - Computational Science - ICCS 2006, Lecture Notes in Computer Science, 6th International Conference, PB - Springer Berlin/Heidelberg CY - Reading, UK VL - 3993 UR - http://www.springerlink.com/content/5603gh1252528020 ER -